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Unveiling the Distinctive Features of Industrial Microorganism
KAIST researchers have sequenced the whole genome of Clostridium tyrobutyricum, which has a higher tolerance to toxic chemicals, such as 1-butanol, compared to other clostridial bacterial strains.
Clostridium tyrobutyricum, a Gram-positive, anaerobic spore-forming bacterium, is considered a promising industrial host strain for the production of various chemicals including butyric acid which has many applications in different industries such as a precursor to biofuels. Despite such potential, C. tyrobutyricum has received little attention, mainly due to a limited understanding of its genotypic and metabolic characteristics at the genome level.
A Korean research team headed by Distinguished Professor Sang Yup Lee of the Chemical and Biomolecular Engineering Department at the Korea Advanced Institute of Science and Technology (KAIST) deciphered the genome sequence of C. tyrobutyricum and its proteome profiles during the course of batch fermentation. As a result, the research team learned that the bacterium is not only capable of producing a large amount of butyric acid but also can tolerate toxic compounds such as 1-butanol. The research results were published in mBio on June 14, 2016.
The team adopted a genoproteomic approach, combining genomics and proteomics, to investigate the metabolic features of C. tyrobutyricum. Unlike Clostridium acetobutylicum, the most widely used organism for 1-butanol production, C. tyrobutyricum has a novel butyrate-producing pathway and various mechanisms for energy conservation under anaerobic conditions. The expression of various metabolic genes, including those involved in butyrate formation, was analyzed using the “shotgun” proteome approach.
To date, the bio-based production of 1-butanol, a next-generation biofuel, has relied on several clostridial hosts including C. acetobutylicum and C. beijerinckii. However, these organisms have a low tolerance against 1-butanol even though they are naturally capable of producing it. C. tyrobutyricum cannot produce 1-butanol itself, but has a higher 1-butanol-tolerance and rapid uptake of monosaccharides, compared to those two species.
The team identified most of the genes involved in the central metabolism of C. tyrobutyricum from the whole-genome and shotgun proteome data, and this study will accelerate the bacterium’s engineering to produce useful chemicals including butyric acid and 1-butanol, replacing traditional bacterial hosts.
Professor Lee said,
“The unique metabolic features and energy conservation mechanisms of C. tyrobutyricum can be employed in the various microbial hosts we have previously developed to further improve their productivity and yield. Moreover, findings on C. tyrobutyricum revealed by this study will be the first step to directly engineer this bacterium.”
Director Jin-Woo Kim at the Platform Technology Division of the Ministry of Science, ICT and Future Planning of Korea, who oversees the Technology Development Program to Solve Climate Change, said,
“Over the years, Professor Lee’s team has researched the development of a bio-refinery system to produce natural and non-natural chemicals with the systems metabolic engineering of microorganisms. They were able to design strategies for the development of diverse industrial microbial strains to produce useful chemicals from inedible biomass-based carbon dioxide fixation. We believe the efficient production of butyric acid using a metabolic engineering approach will play an important role in the establishment of a bioprocess for chemical production.”
The title of the research paper is “Deciphering Clostridium tyrobutyricum Metabolism Based on the Who-Genome Sequence and Proteome Analyses.” (DOI: 10.1128/mBio.00743-16)
The lead authors are Joungmin Lee, a post-doctoral fellow in the BioProcess Research Center at KAIST, currently working in CJ CheilJedang Research Institute; Yu-Sin Jang, a research fellow in the BioProcess Research Center at KAIST, currently working at Gyeongsang National University as an assistant professor; and Mee-Jung Han, an assistant professor in the Environmental Engineering and Energy Department at Dongyang University. Jin Young Kim, a senior researcher at the Korea Basic Science Institute, also participated in the research.
This research was supported by the Technology Development Program to Solve Climate Change’s research project entitled “Systems Metabolic Engineering for Biorefineries” from the Ministry of Science, ICT and Future Planning through the National Research Foundation of Korea (NRF-2012M1A2A2026556).
Schematic Diagram of C. tyrobutyricum’s Genome Sequence and Its Proteome Profiles
The picture below shows the complete genome sequence, global protein expression profiles, and the genome-based metabolic characteristics during batch fermentation of C. tyrobutyricum.
2016.06.20 View 9492 -
Special Lecture by Professor Sung-Hou Kim of UC Berkeley
As part of its special lecture series, the Department of Biological Sciences at KAIST has invited Professor Sung-Hou Kim of the Department of Chemistry at the University of California, Berkeley, to lecture on his research in structural biology. He will speak twice on May 23 and 30, respectively, on the topics “Origin of Universe and Earth—A Narrative” and “Origin of Life and Human Species—A Narrative.”
Professor Kim's research addresses the structural basis of molecules to reveal how they communicate with each other to activate or inhibit particular processes in cell growth, cell differentiation, and cancer. Using the single-crystal X-ray diffraction technology, he discovered, for the first time in the world, the three-dimensional (3-D) structure of a transfer RNA (t-RNA) and received much praise for this work from the scientific community. Since then, he has been cited as a candidate for a Nobel Prize in Chemistry for many years.
He also examined the 3-D structures of a RAS protein in normal and cancer cells and identified the mutations of the RAS protein as a cause for cancer. His work has assisted in the development of target drugs for cancer treatment. In recent years, he has adopted a computational biology approach to study the structure and function of biological genomics, with which he has tried to predict disease-sensitive genes.
Professor Kim graduated from Seoul National University in 1962 and received his Ph.D. degree in chemistry from the University of Pittsburgh in the United States in 1966. He worked at the Massachusetts Institute of Technology (MIT) as a senior research scientist, and has taught at UC Berkeley since 1978.
2016.05.23 View 6154 -
KAIST Researchers Receive the 2016 IEEE William R. Bennett Prize
A research team led by Professors Yung Yi and Song Chong from the Electrical Engineering Department at KAIST has been awarded the 2016 William R. Bennett Prize of the Institute of Electrical and Electronics Engineers (IEEE), which is the most prestigious award in the field of communications network. The IEEE bestows the honor annually and selects winning papers from among those published in the past three years for its quality, originality, scientific citation index, and peer reviews.
The IEEE award ceremony will take place on May 24, 2016 at the IEEE International Conference on Communications in Kuala Lumpur, Malaysia.
The team members include Dr. Kyoung-Han Lee, a KAIST graduate, who is currently a professor at Ulsan National Institute of Science and Technology (UNIST) in Korea, Dr. Joo-Hyun Lee, a postdoctoral researcher at Ohio State University in the United States, and In-Jong Rhee, a vice president of the Mobile Division at Samsung Electronics. The same KAIST team previously received the award back in 2013, making them the second recipient ever to win the IEEE William R. Bennett Prize twice.
Past winners include Professors Robert Gallager of the Massachusetts Institute of Technology (MIT), Sachin Katti of Stanford University, and Ion Stoica of the University of California at Berkeley.
The research team received the Bennett award for their work on “Mobile Data Offloading: How Much Can WiFi Deliver?” Their research paper has been cited more than 500 times since its publication in 2013. They proposed an original method to effectively offload the cellular network and maximize the Wi-Fi network usage by analyzing the pattern of individual human mobility in daily life.
2016.05.02 View 12169 -
KAIST, NTU, and Technion Collaborate for Research in Emerging Fields
KAIST, Nanyang Technological University (NTU) of Singapore, and Technion of Israel signed an agreement on April 11, 2016 in Seoul to create a five-year joint research program for some of the most innovative and entrepreneurial areas: robotics, medical technologies, satellites, materials science and engineering, and entrepreneurship. Under the agreement, the universities will also offer dual degree opportunities, exchange visits, and internships.
In the picture from the left, Bertil Andersson of NTU, Sung-Mo Kang of KAIST, and Peretz Lavie of Technion hold the signed memorandum of understanding.
2016.04.14 View 9664 -
Public Lectures on the Korean Language and Alphabet
The School of Humanities and Social Sciences at KAIST will offer public lectures on the Korean language and alphabet, Hangul, from March 22, 2016 to April 26, 2016.
The lectures, which are entitled “The Riddle of Hangul,” will take place on campus in Daejeon.
A total of six lectures will be held on such topics as the origin of Korean, the grammar of ancient Korean in the Chosun Dynasty (1392-1897), and subsequent developments in contemporary Korean.
Professor Jung-Hoon Kim, who is responsible for organizing the public lecture program, said, “The audience will have an interesting opportunity to understand the history of Korean and its mechanism, while reviewing the unique spelling system of Hangul. I hope many people will show up for these wonderful classes.”
For further information and registration, please visit: http://hss.kaist.ac.kr. All lectures, available only in Korean, are free and open to the public.
2016.03.15 View 7413 -
KAIST Graduate Han Receives a 2016 PECASE Award
President Barack Obama of the United States (US) announced 105 recipients of the 2016 Presidential Early Career Awards for Scientists and Engineers (PECASE) on February 18. Among the awardees was a graduate from the Department of Electrical Engineering at KAIST.
Dr. Jin-Woo Han has worked as a research scientist at the National Aeronautics and Space Administration (NASA) Ames Research Center since graduating from KAIST in 2010. This year, he is the only awardee who received a doctoral degree from a Korean university to become a recipient of the highest honor bestowed by the US government on science and engineering professionals in the early stages of their independent research careers.
The awards ceremony will take place in early spring at the White House in Washington, D.C.
Dr. Han has been involved in the development of radiation tolerant semiconductor devices as well as radiation and gas sensors under Dr. Meyya Meyyappan, Chief Scientist of the Center for Nanotechnology at NASA Ames Research Center.
KAIST and the NASA Ames Research Center made a research collaboration agreement in 2008, under which KAIST has sent 12 post-doctoral fellows to the center to date.
The PECASE awards, established in 1996 by President Bill Clinton, are coordinated by the Office of Science and Technology Policy within the Executive Office of the US President. Awardees are selected for their pursuit of innovative research at the frontiers of science and technology and their commitment to community services as demonstrated through scientific leadership, public education, or community outreach.
2016.02.23 View 8884 -
Meditox Donates 600 Million KRW Scholarship
On February 17, a Korean biopharmaceutical company Meditox, headed by Chief Executive Officer (CEO) Hyun-Ho Jeong, signed a memorandum of understanding (MOU) with KAIST to establish the “Meditox Fellowship” and donated a total of 600 million Korean won (KRW) to the university to assist in promoting more scientists in the field of biology.
Meditox CEO Hyun-Ho Jeong, KAIST President Steve Kang, Dean of Life Science and Bioengineering College Jung-Hoe Kim, and Dean of the Department of Biological Sciences Byung-Ha Oh participated in the agreement ceremony.
According to the MOU, Meditox will donate 60,000,000 KRW over a ten year period, from which KAIST can draw on to grant scholarships for master’s and doctoral students.
The “Meditox Fellowship” will support promising and enthusiastic students whose finances limit their studies. The first scholarship students for 2016 were: Kwang-Uk Min, In-suk Yeo, Sung-ryung- Lee, Si-on Lee, and Jung-hyun Kim.
Meditox CEO Jeong, who graduated from KAIST’s Department of Biological Sciences, said, "I felt it was important to start the Meditox Fellowship at my alma mater to contribute to the cultivation of outstanding scientists in the field of biological sciences."
He also said that he would plan to launch projects that aim to support not only those who receive the scholarship but also the development of Korea’s biological sciences in general.
President Steve Kang (right) and Chief Executive Officer Hyun-Ho Jeong (left) of Meditox hold the signed memorandum of understanding together.
2016.02.18 View 8815 -
Ph.D. Candidate Seo Wins the Human Tech Paper Award
Hyun-Suk Seo, a doctoral student of KAIST’s Department of Electrical Engineering, received the grand prize of the “22nd Human Tech Paper Award” on February 3, 2016 from Samsung Electronics Co., Ltd.
Seo was the first to receive this prize ever since the Human Tech Paper Award was established 22 years ago. Until last year, the highest prize awarded for KAIST was a gold one.
The “Human Tech Paper Award” was established in 1994 by Samsung Electronics to discover and support outstanding scientists in the field of electrical engineering.
Entitled “Self-Gated Cardiac Cine MRI Using Phase Information,” Seo’s paper presented a technology that would reduce discomforts and inconveniences experienced by patients who take a magnetic resonance imaging (MRI).
This technology uses the speed changes of aorta and the abdominal movements of body to obtain the phase changes of magnetic resonance signals so that MRIs may be taken despite the organs’ movements.
Seo commented on his research, “I wanted to develop a technique that can make MRI a more comfortable experience. I will continue my research on this subject and hope to serve the needs of the society.”
In addition, the “Special Award,” which is given to schools, was awarded to KAIST. KAIST’s Department of Electrical Engineering has also been named the department that has received the second most awards (15 awards) this year.
Oh-Hyun Kwon, Vice President of Samsung Electronics, Steve Kang, President of KAIST, and Nak-In Seo, President of Seoul National University, participated in the event.
Picture: Hyun-Suk Seo (left), the recipient of the grand prize of the 2016 Human Tech Paper Award, and Oh-Hyun Kwon (right), Vice President of Samsung Electronics
2016.02.06 View 7574 -
Asia Pacific Biotech News' Special Coverage of Korean Biotechnology
The Asia Pacific Biotech News covered five major biotechnology research projects sponsored by the Korean government in the areas of biofuels, biomedicine, bio-nano healthcare, and biorefinery.
The Asia Pacific Biotech News (APBN), a monthly magazine based in Singapore, which offers comprehensive reports on the fields of pharmaceuticals, healthcare, and biotechnology, recently published a special feature on Korea’s biotechnology research and development (R&D) programs.
The magazine feature selected five research programs sponsored by the Korean government, which are either part of the Global Frontier or the Climate Change Technology Development Projects.
The programs are:
Systems Metabolic Engineering Research: Distinguished Professor Sang Yup Lee
of the Chemical and Biomolecular Engineering Department at the Korea Advanced
Institute of Science and Technology (KAIST) has been leading a research group to
develop biorefining technology using renewable non-food biomass to produce
chemicals, fuels, and materials that were largely drawn from fossil resources
through petrochemical refinery processes. Applying a systems metabolic
engineering approach, the group succeeded in modifying the metabolic pathways of
microorganisms. As a result, they produced, for the first time in the world,
engineered plastic raw materials and gasoline. The team also developed a technique
to produce butanol and succinic acid with a higher titer and yield using metabolically
engineered microorganisms.
Next-generation Biomass Research: Under the leadership of Professor Yong-
Keun Chang of the Chemical and Biomolecular Engineering Department at KAIST,
the research project, which belongs to the Global Frontier Project, develops biofuels
and bioproducts utilizing microalgae typically found in water and other marine
systems.
Convergence Research for Biomedicine: Professor Sung-Hoon Kim of Seoul
National University leads this project that develops targeted new drugs based on
convergence research strategies.
Bionano Healthcare Chip Research: Director Bong-Hyun Chung of the Korea
Research Institute of Bioscience and Biotechnology has integrated information and
communications technology, nanotechnology, and biotechnology to develop a
diagnostic kit that can screen toxic germs, virus, and toxic materials in a prompt
and accurate manner.
Biosynergy Research: Led by Professor Do-Hun Lee of the Bio and Brain
Engineering Department at KAIST, this research project develops new treatments
with a multi-target, multi-component approach in the context of systems biology
through an analysis of synergistic reactions between multi-compounds in traditional
East Asian medicine and human metabolites. In East Asian medicine, treatment and
caring of the human body are considered analogous to the politics of governing a
nation. Based on such system, the research focuses on designing a foundation for
the integration of traditional medicine with modern drug discovery and development.
Director Ilsub Baek at the Platform Technology Division of the Ministry of Science, ICT and Future Planning, Republic of Korea, who is responsible for the Global Frontier Program and the Technology to Solve Climate Change, said, “It is great to see that Asia Pacific Biotech News published an extensive coverage of Korea’s several key research programs on biotechnology as its first issue of this year. I am sure that these programs will lead to great outcomes to solve many worldwide pending issues including climate change and healthcare in the aging society.”
Professor Sang Yup Lee, who served as an editor of the feature, said, “At the request of the magazine, we have already published lead articles on our biotechnology research three times in the past in 2002, 2006, and 2011. I am pleased to see continued coverage of Korean biotechnology by the magazine because it recognizes the excellence of our research. Biotechnology has emerged as one of the strong fields that addresses important global issues such as climate change and sustainability.”
2016.02.04 View 11357 -
IdeasLab Presents Biotechnology Solutions for Aging Populations at 2016 Davos Forum
KAIST researchers will discuss how biological sciences and health technologies can address challenges and opportunities posed by aging populations in an era of increasing longevity.
Many countries around the world today are experiencing the rapid growth of aging populations, with a decline in fertility rate and longer life expectancy.
At this year's Annual Meeting of the World Economic Forum (a.k.a. Davos Forum) on January 20-23, 2016 in Davos-Klosters, Switzerland, four researchers in the field of biological sciences and biotechnology at the Korea Advanced Institute of Science and Technology (KAIST) will discuss the implications of an aging population and explore possible solutions to provide better health care services to the elderly.
KAIST will host an IdeasLab twice on the theme "Biotechnology Solutions for Ageing Populations" on January 21st and 23rd, respectively.
Professor Byung-Kwan Cho of the Biological Sciences Department will give a presentation on "Rejuvenation via the Microbiome," explaining how microorganisms in the human gut play an important role in preventing aging, or even rejuvenating it.
Distinguished Professor Sang Yup Lee of the Chemical and Biomolecular Engineering Department will talk about "Traditional Medicine Reimagined through Modern Systems Biology." Professor Lee will introduce his research results published in Nature Biotechnology (March 6, 2015) and some more new results. He discovered the mechanisms of traditional oriental medicine's (TOM) efficacy by applying systems biology to study structural similarities between natural and nontoxic multi-compounds in the medicine and human metabolites. He will discuss TOM's multi-target approach, which is based on the synergistic combinations of multi-compounds to treat symptoms of a disease, can contribute to the development of new drugs, cosmetics, and nutrients.
Professor Youn-Kyung Lim of the Industrial Design Department will speak about a mobile and the Internet of Things-based health care service called "Dr. M" in her presentation on "Advanced Mobile Healthcare Systems."
Professor Daesoo Kim of the Biological Sciences Department will share his research on human's happiness and greed in the context of nueroscience and behavioral and biological sciences in a talk entitled "A Neural Switch for Being Happy with Less on a Crowded Planet."
KAIST has hosted IdeasLabs several times at the Summer Davos Forum in China, but this is the first time it will participate in the Davos Forum in January.
Professor Lee said, "Just like climate change, the issue of how to address aging populations has become a major global issue. We will share some exciting research results and hope to have in depth discussion on this issue with the leaders attending the Davos Forum. KAIST will engage actively in finding solutions that benefit not only Korea but also the international community."
2016.01.19 View 10111 -
Symposium on Creative Education
KAIST and the Korea Society for Creativity and Application (KSCA) co-hosted a symposium on creative education on January 21, 2016 at the KAIST Business and Management College in Seoul. Along with the symposium, the two organizations also held the Korea "Theory of Inventive Problem Solving" (TRIZ) Festival 2016.
Around 200 experts from academia, industry, and research including Dong-Suk Kim, Dean of the KAIST College of Business and Management and Gui-Chan Park, Director of POSCO Group Academy, attended the symposium.
The event was organized to celebrate the foundation of KSCA and to increase social awareness of creative education and design-related thinking with a "TRIZ approach."
"TRIZ" stands for the “Theory of Inventive Problem Solving” in Russian. It is a problem-solving method based on logic and data, not intuition, which accelerates the project team’s ability to work out issues creatively. The "TRIZ approach" has been widely used among Korean companies including Samsung, LG, and POSCO as a means of boosting employees’ creativity.
The academic symposium was divided into a keynote speech, paper presentations from each field, and a poster fair.
Professor Dae-Sik Kim from KAIST delivered a keynote speech on “Neuroscience and Creativity,” offering a glimpse of the world from a neuroscience perspective. Jae-min Lee, a researcher at Samsung Electronics, provided an industrial case study, “Application of TRIZ for the Improvement of Refrigerator.” Professor Jung-Seok Hyun from Jeju University and Dr. Jung-Ho Shin from E-Triz System presented their application of TRIZ on “Limitless Imagination and Invention Class for the Elementary School Students.” Altogether, 36 other research papers and case studies were presented at the symposium.
Dr. Dong-ryul Yang, President of KSCA, said, “This academic symposium allows us to discuss a range of innovative case studies that utilize TRIZ in industrial and educational fields, from which we can learn good lessons and practices.”
2016.01.19 View 5681 -
Professors Jeon and Choi Receive the Young Scientist Award
Professors Seokwoo Jeon of the Department of Materials Science and Engineering and Jang Wook Choi of the Graduate School of Energy, Environment, Water and Sustainability (EEWS) at KAIST received the Young Scientist Award.
The award ceremony took place at the Korea Press Center in Seoul. Presented by the Ministry of Science, ICT and Future Planning of Korea and the National Academy of Engineering of Korea, the Young Scientist Award is given to outstanding scientists under the age of 40 who have demonstrated excellence in their research in the field of natural science.
Each year the award is given to three scientists in different areas.
Professor Jeon was recognized for his achievement in creating a new property of materials. He studied synthesis and development of low-dimensional nanomaterials and developed a large area nanostructure.
Professor Choi’s research area was to discover optimal materials for rechargeable batteries. By applying his research, he developed rechargeable batteries with high efficiency, making the wearable system more feasible.
2016.01.11 View 10034