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Unveiling the Distinctive Features of Industrial Microorganism
KAIST researchers have sequenced the whole genome of Clostridium tyrobutyricum, which has a higher tolerance to toxic chemicals, such as 1-butanol, compared to other clostridial bacterial strains.
Clostridium tyrobutyricum, a Gram-positive, anaerobic spore-forming bacterium, is considered a promising industrial host strain for the production of various chemicals including butyric acid which has many applications in different industries such as a precursor to biofuels. Despite such potential, C. tyrobutyricum has received little attention, mainly due to a limited understanding of its genotypic and metabolic characteristics at the genome level.
A Korean research team headed by Distinguished Professor Sang Yup Lee of the Chemical and Biomolecular Engineering Department at the Korea Advanced Institute of Science and Technology (KAIST) deciphered the genome sequence of C. tyrobutyricum and its proteome profiles during the course of batch fermentation. As a result, the research team learned that the bacterium is not only capable of producing a large amount of butyric acid but also can tolerate toxic compounds such as 1-butanol. The research results were published in mBio on June 14, 2016.
The team adopted a genoproteomic approach, combining genomics and proteomics, to investigate the metabolic features of C. tyrobutyricum. Unlike Clostridium acetobutylicum, the most widely used organism for 1-butanol production, C. tyrobutyricum has a novel butyrate-producing pathway and various mechanisms for energy conservation under anaerobic conditions. The expression of various metabolic genes, including those involved in butyrate formation, was analyzed using the “shotgun” proteome approach.
To date, the bio-based production of 1-butanol, a next-generation biofuel, has relied on several clostridial hosts including C. acetobutylicum and C. beijerinckii. However, these organisms have a low tolerance against 1-butanol even though they are naturally capable of producing it. C. tyrobutyricum cannot produce 1-butanol itself, but has a higher 1-butanol-tolerance and rapid uptake of monosaccharides, compared to those two species.
The team identified most of the genes involved in the central metabolism of C. tyrobutyricum from the whole-genome and shotgun proteome data, and this study will accelerate the bacterium’s engineering to produce useful chemicals including butyric acid and 1-butanol, replacing traditional bacterial hosts.
Professor Lee said,
“The unique metabolic features and energy conservation mechanisms of C. tyrobutyricum can be employed in the various microbial hosts we have previously developed to further improve their productivity and yield. Moreover, findings on C. tyrobutyricum revealed by this study will be the first step to directly engineer this bacterium.”
Director Jin-Woo Kim at the Platform Technology Division of the Ministry of Science, ICT and Future Planning of Korea, who oversees the Technology Development Program to Solve Climate Change, said,
“Over the years, Professor Lee’s team has researched the development of a bio-refinery system to produce natural and non-natural chemicals with the systems metabolic engineering of microorganisms. They were able to design strategies for the development of diverse industrial microbial strains to produce useful chemicals from inedible biomass-based carbon dioxide fixation. We believe the efficient production of butyric acid using a metabolic engineering approach will play an important role in the establishment of a bioprocess for chemical production.”
The title of the research paper is “Deciphering Clostridium tyrobutyricum Metabolism Based on the Who-Genome Sequence and Proteome Analyses.” (DOI: 10.1128/mBio.00743-16)
The lead authors are Joungmin Lee, a post-doctoral fellow in the BioProcess Research Center at KAIST, currently working in CJ CheilJedang Research Institute; Yu-Sin Jang, a research fellow in the BioProcess Research Center at KAIST, currently working at Gyeongsang National University as an assistant professor; and Mee-Jung Han, an assistant professor in the Environmental Engineering and Energy Department at Dongyang University. Jin Young Kim, a senior researcher at the Korea Basic Science Institute, also participated in the research.
This research was supported by the Technology Development Program to Solve Climate Change’s research project entitled “Systems Metabolic Engineering for Biorefineries” from the Ministry of Science, ICT and Future Planning through the National Research Foundation of Korea (NRF-2012M1A2A2026556).
Schematic Diagram of C. tyrobutyricum’s Genome Sequence and Its Proteome Profiles
The picture below shows the complete genome sequence, global protein expression profiles, and the genome-based metabolic characteristics during batch fermentation of C. tyrobutyricum.
2016.06.20 View 10523 -
Graphene-Based Transparent Electrodes for Highly Efficient Flexible OLEDs
A Korean research team developed an ideal electrode structure composed of graphene and layers of titanium dioxide and conducting polymers, resulting in highly flexible and efficient OLEDs.
The arrival of a thin and lightweight computer that even rolls up like a piece of paper will not be in the far distant future. Flexible organic light-emitting diodes (OLEDs), built upon a plastic substrate, have received greater attention lately for their use in next-generation displays that can be bent or rolled while still operating.
A Korean research team led by Professor Seunghyup Yoo from the School of Electrical Engineering, KAIST and Professor Tae-Woo Lee from the Department of Materials Science and Engineering, Pohang University of Science and Technology (POSTECH) has developed highly flexible OLEDs with excellent efficiency by using graphene as a transparent electrode (TE) which is placed in between titanium dioxide (TiO2) and conducting polymer layers. The research results were published online on June 2, 2016 in Nature Communications.
OLEDs are stacked in several ultra-thin layers on glass, foil, or plastic substrates, in which multi-layers of organic compounds are sandwiched between two electrodes (cathode and anode). When voltage is applied across the electrodes, electrons from the cathode and holes (positive charges) from the anode draw toward each other and meet in the emissive layer. OLEDs emit light as an electron recombines with a positive hole, releasing energy in the form of a photon. One of the electrodes in OLEDs is usually transparent, and depending on which electrode is transparent, OLEDs can either emit from the top or bottom.
In conventional bottom-emission OLEDs, an anode is transparent in order for the emitted photons to exit the device through its substrate. Indium-tin-oxide (ITO) is commonly used as a transparent anode because of its high transparency, low sheet resistance, and well-established manufacturing process. However, ITO can potentially be expensive, and moreover, is brittle, being susceptible to bending-induced formation of cracks.
Graphene, a two-dimensional thin layer of carbon atoms tightly bonded together in a hexagonal honeycomb lattice, has recently emerged as an alternative to ITO. With outstanding electrical, physical, and chemical properties, its atomic thinness leading to a high degree of flexibility and transparency makes it an ideal candidate for TEs. Nonetheless, the efficiency of graphene-based OLEDs reported to date has been, at best, about the same level of ITO-based OLEDs.
As a solution, the Korean research team, which further includes Professors Sung-Yool Choi (Electrical Engineering) and Taek-Soo Kim (Mechanical Engineering) of KAIST and their students, proposed a new device architecture that can maximize the efficiency of graphene-based OLEDs. They fabricated a transparent anode in a composite structure in which a TiO2 layer with a high refractive index (high-n) and a hole-injection layer (HIL) of conducting polymers with a low refractive index (low-n) sandwich graphene electrodes. This is an optical design that induces a synergistic collaboration between the high-n and low-n layers to increase the effective reflectance of TEs. As a result, the enhancement of the optical cavity resonance is maximized. The optical cavity resonance is related to the improvement of efficiency and color gamut in OLEDs. At the same time, the loss from surface plasmon polariton (SPP), a major cause for weak photon emissions in OLEDs, is also reduced due to the presence of the low-n conducting polymers.
Under this approach, graphene-based OLEDs exhibit 40.8% of ultrahigh external quantum efficiency (EQE) and 160.3 lm/W of power efficiency, which is unprecedented in those using graphene as a TE. Furthermore, these devices remain intact and operate well even after 1,000 bending cycles at a radius of curvature as small as 2.3 mm. This is a remarkable result for OLEDs containing oxide layers such as TiO2 because oxides are typically brittle and prone to bending-induced fractures even at a relatively low strain. The research team discovered that TiO2 has a crack-deflection toughening mechanism that tends to prevent bending-induced cracks from being formed easily.
Professor Yoo said, “What’s unique and advanced about this technology, compared with previous graphene-based OLEDs, is the synergistic collaboration of high- and low-index layers that enables optical management of both resonance effect and SPP loss, leading to significant enhancement in efficiency, all with little compromise in flexibility.” He added, “Our work was the achievement of collaborative research, transcending the boundaries of different fields, through which we have often found meaningful breakthroughs.”
Professor Lee said, “We expect that our technology will pave the way to develop an OLED light source for highly flexible and wearable displays, or flexible sensors that can be attached to the human body for health monitoring, for instance.”
The research paper is entitled “Synergistic Electrode Architecture for Efficient Graphene-based Flexible Organic Light-emitting Diodes” (DOI. 10.1038/NCOMMS11791). The lead authors are Jae-Ho Lee, a Ph.D. candidate at KAIST; Tae-Hee Han, a Ph.D. researcher at POSTECH; and Min-Ho Park, a Ph.D. candidate at POSTECH.
This study was supported by the Basic Science Research Program of the National Research Foundation of Korea (NRF) through the Center for Advanced Flexible Display (CAFDC) funded by the Ministry of Science, ICT and Future Planning (MSIP); by the Center for Advanced Soft-Electronics funded by the MSIP as a Global Frontier Project; by the Graphene Research Center Program of KAIST; and by grants from the IT R&D Program of the Ministry of Trade, Industry and Energy of Korea (MOTIE).
Figure 1: Application of Graphene-based OLEDs
This picture shows an OLED with the composite structure of TiO2/graphene/conducting polymer electrode in operation. The OLED exhibits 40.8% of ultrahigh external quantum efficiency (EQE) and 160.3 lm/W of power efficiency. The device prepared on a plastic substrate shown in the right remains intact and operates well even after 1,000 bending cycles at a radius of curvature as small as 2.3 mm.
Figure 2: Schematic Device Structure of Graphene-based OLEDs
This picture shows the new architecture to develop highly flexible OLEDs with excellent efficiency by using graphene as a transparent electrode (TE).
2016.06.07 View 13809 -
Special Lecture by Professor Sung-Hou Kim of UC Berkeley
As part of its special lecture series, the Department of Biological Sciences at KAIST has invited Professor Sung-Hou Kim of the Department of Chemistry at the University of California, Berkeley, to lecture on his research in structural biology. He will speak twice on May 23 and 30, respectively, on the topics “Origin of Universe and Earth—A Narrative” and “Origin of Life and Human Species—A Narrative.”
Professor Kim's research addresses the structural basis of molecules to reveal how they communicate with each other to activate or inhibit particular processes in cell growth, cell differentiation, and cancer. Using the single-crystal X-ray diffraction technology, he discovered, for the first time in the world, the three-dimensional (3-D) structure of a transfer RNA (t-RNA) and received much praise for this work from the scientific community. Since then, he has been cited as a candidate for a Nobel Prize in Chemistry for many years.
He also examined the 3-D structures of a RAS protein in normal and cancer cells and identified the mutations of the RAS protein as a cause for cancer. His work has assisted in the development of target drugs for cancer treatment. In recent years, he has adopted a computational biology approach to study the structure and function of biological genomics, with which he has tried to predict disease-sensitive genes.
Professor Kim graduated from Seoul National University in 1962 and received his Ph.D. degree in chemistry from the University of Pittsburgh in the United States in 1966. He worked at the Massachusetts Institute of Technology (MIT) as a senior research scientist, and has taught at UC Berkeley since 1978.
2016.05.23 View 6831 -
KAIST Researchers Receive the 2016 IEEE William R. Bennett Prize
A research team led by Professors Yung Yi and Song Chong from the Electrical Engineering Department at KAIST has been awarded the 2016 William R. Bennett Prize of the Institute of Electrical and Electronics Engineers (IEEE), which is the most prestigious award in the field of communications network. The IEEE bestows the honor annually and selects winning papers from among those published in the past three years for its quality, originality, scientific citation index, and peer reviews.
The IEEE award ceremony will take place on May 24, 2016 at the IEEE International Conference on Communications in Kuala Lumpur, Malaysia.
The team members include Dr. Kyoung-Han Lee, a KAIST graduate, who is currently a professor at Ulsan National Institute of Science and Technology (UNIST) in Korea, Dr. Joo-Hyun Lee, a postdoctoral researcher at Ohio State University in the United States, and In-Jong Rhee, a vice president of the Mobile Division at Samsung Electronics. The same KAIST team previously received the award back in 2013, making them the second recipient ever to win the IEEE William R. Bennett Prize twice.
Past winners include Professors Robert Gallager of the Massachusetts Institute of Technology (MIT), Sachin Katti of Stanford University, and Ion Stoica of the University of California at Berkeley.
The research team received the Bennett award for their work on “Mobile Data Offloading: How Much Can WiFi Deliver?” Their research paper has been cited more than 500 times since its publication in 2013. They proposed an original method to effectively offload the cellular network and maximize the Wi-Fi network usage by analyzing the pattern of individual human mobility in daily life.
2016.05.02 View 13423 -
KAIST, NTU, and Technion Collaborate for Research in Emerging Fields
KAIST, Nanyang Technological University (NTU) of Singapore, and Technion of Israel signed an agreement on April 11, 2016 in Seoul to create a five-year joint research program for some of the most innovative and entrepreneurial areas: robotics, medical technologies, satellites, materials science and engineering, and entrepreneurship. Under the agreement, the universities will also offer dual degree opportunities, exchange visits, and internships.
In the picture from the left, Bertil Andersson of NTU, Sung-Mo Kang of KAIST, and Peretz Lavie of Technion hold the signed memorandum of understanding.
2016.04.14 View 11338 -
KAIST Team Develops Technology to Enable Unzipping of the Graphene Plane
Professor Sang-Wook Kim’s research team of the Material Science and Engineering Department has developed a technique, which enables unzipping of the graphene plane without uncontrollable damage. The research findings were published online on the January 22 issue of Nature Communications.
Graphene is a form of carbon in which its atoms form a honey-comb structure through chemical bonding. If this structure can be cut to a desired form, other carbon materials with nanostructure can be created. Many researchers have tried to obtain the accurate unzipping of graphene structures, but faced challenges doing so.
To break a very strong bond between carbon atoms, an equivalently strong chemical reaction must be induced. But the chemical reaction not only cuts out the desirable borders, but also damages the surrounding ones. Conventional techniques, which cut out graphene at once, damaged the chemical properties of the graphene structure after unzipping. This is similar to wearing out paper while manipulating it.
To solve this problem, the research team adopted “heteroatom doping.” The idea is similar to a sheet of paper being split following a groove drawn on the sheet. After making some regions of the structure unstable by doping other atoms such as nitrogen on a carbon plane, the regions are electrochemically stimulated to split the parts. Nitrogen or other atoms act as the groove on the grapheme plane.
The researchers finely controlled the amount of unzipping graphene by adjusting the amount of heteroatom dopants, from which they were able to create a quality nano graphene without any damage in its 2-dimensional crystalline structure. Using this technique, the researchers were able to obtain a capacitor with state-of-the-art energy transfer speed. The nano graphene can be combined with polymer, metal, and semiconductor nano molecules to form carbon composites.
Professor Kim said, “In order to commercialize this technique, heteroatom doping should be researched further. We plan to develop fabric-like carbon materials with excellent mechanical and electrical properties using this technique.”
Picture 1: Unzipped Carbon Nano Tube
Picture 2: Development of Nano Graphene from Carbon Nano Tube Using Heteroatom Dopants
Korean descriptions translated into English:
Unzipping Process of Graphene
Carbon Nano Tube → Nano Graphen
Heteroatom
This process is similar to a paper being split in two from a tiny hole punched therein.
2016.03.22 View 8884 -
Symposium on Creative Education
KAIST and the Korea Society for Creativity and Application (KSCA) co-hosted a symposium on creative education on January 21, 2016 at the KAIST Business and Management College in Seoul. Along with the symposium, the two organizations also held the Korea "Theory of Inventive Problem Solving" (TRIZ) Festival 2016.
Around 200 experts from academia, industry, and research including Dong-Suk Kim, Dean of the KAIST College of Business and Management and Gui-Chan Park, Director of POSCO Group Academy, attended the symposium.
The event was organized to celebrate the foundation of KSCA and to increase social awareness of creative education and design-related thinking with a "TRIZ approach."
"TRIZ" stands for the “Theory of Inventive Problem Solving” in Russian. It is a problem-solving method based on logic and data, not intuition, which accelerates the project team’s ability to work out issues creatively. The "TRIZ approach" has been widely used among Korean companies including Samsung, LG, and POSCO as a means of boosting employees’ creativity.
The academic symposium was divided into a keynote speech, paper presentations from each field, and a poster fair.
Professor Dae-Sik Kim from KAIST delivered a keynote speech on “Neuroscience and Creativity,” offering a glimpse of the world from a neuroscience perspective. Jae-min Lee, a researcher at Samsung Electronics, provided an industrial case study, “Application of TRIZ for the Improvement of Refrigerator.” Professor Jung-Seok Hyun from Jeju University and Dr. Jung-Ho Shin from E-Triz System presented their application of TRIZ on “Limitless Imagination and Invention Class for the Elementary School Students.” Altogether, 36 other research papers and case studies were presented at the symposium.
Dr. Dong-ryul Yang, President of KSCA, said, “This academic symposium allows us to discuss a range of innovative case studies that utilize TRIZ in industrial and educational fields, from which we can learn good lessons and practices.”
2016.01.19 View 6516 -
Professors Jeon and Choi Receive the Young Scientist Award
Professors Seokwoo Jeon of the Department of Materials Science and Engineering and Jang Wook Choi of the Graduate School of Energy, Environment, Water and Sustainability (EEWS) at KAIST received the Young Scientist Award.
The award ceremony took place at the Korea Press Center in Seoul. Presented by the Ministry of Science, ICT and Future Planning of Korea and the National Academy of Engineering of Korea, the Young Scientist Award is given to outstanding scientists under the age of 40 who have demonstrated excellence in their research in the field of natural science.
Each year the award is given to three scientists in different areas.
Professor Jeon was recognized for his achievement in creating a new property of materials. He studied synthesis and development of low-dimensional nanomaterials and developed a large area nanostructure.
Professor Choi’s research area was to discover optimal materials for rechargeable batteries. By applying his research, he developed rechargeable batteries with high efficiency, making the wearable system more feasible.
2016.01.11 View 11798 -
KAIST Wins the Korea Donation for Education Awards 2015
KAIST received the grand prize for the university section at the Korea Donation for Education Awards 2015. The award ceremony took place at Seoul Plaza Hotel on December 15, 2015.
The Ministry of Education created the award in 2012 to raise awareness about the need for charitable donations for education and to encourage the public’s participation in such endeavors. Recipients have included private companies, public institutions, non-profit organizations, universities, and individuals who have made notable contributions to education, for example, by offering educational programs or fundraising for such programs throughout a year.
Many organizations within KAIST, including the KAIST Center of Donation for Education, the Midam Scholarship Committee, the Donation for Software Education Group, the Chalk Academy, KAIST Student Volunteers, and K-LET, have been collectively recognized for their efforts to develop educational materials and managing academic camps and programs.
In addition to the grand prize which KAIST won, the Ministry of Education gave Neung-In Jang, a student pursuing a social entrepreneurship MBA at KAIST, an award for his efforts to provide quality education to teenagers by establishing the Midam Scholarship Committee in 2009. The Scholarship aims to revitalize the culture of donation for education by offering free math and science classes to high school students who are less privileged and by inspiring other universities in Korea to follow suit the committee’s volunteering activities.
2015.12.22 View 9544 -
Public Forum on the Development of High-Performance Supercomputing System
KAIST hosted a public forum on the development of high-performance supercomputing systems at the K Hotel in Seoul on December 17, 2015.
About 100 participants attended the forum, including Steve Kang, the President of KAIST; Jae-Moon Park, the Director General of Science, ICT and Future Planning of the Republic of Korea; Sun-Hwa Hahn, the President of the Korea Institute of Science and Technology Information; Sang-Gyu Park, the Director of the Electronics and Telecommunications Research Institute; Soon-Chill Lee, the Dean of KAIST’s Natural Sciences College; Jangwoo Kim, the Professor of Computer Science and Engineering of Pohang University of Science and Technology; and Kyung-Hak Suh, the Director of Convergence Technology Division at the National Research Foundation of Korea.
Also attending the forum were representatives from the private sector, including Sung-Soon Park, the President of Gluesys; Myung-Chul Lee, the Director of IMB Korea; Jin-Hyun Choi, the President of Cray Korea; and Chung-Gun Yoo, the Director of HP Korea.
KAIST created the High-performance Computing Development Forum in July this year. Since then, the forum has held four conferences and workshops to discuss issues related to the growth of supercomputing power in Korea.
This public forum consisted of a keynote speech on the “Policy Proposal for the Development of Supercomputers” by Professor Hyuk-Jae Lee of the Electrical and Computer Engineering Department at Seoul National University and panel discussions presided over by President Kang on the topic of “Development and Implementation Strategies to Build Korean Supercomputers.”
President Kang said, “I hope this public forum can serve as a place for designing the future of Korean supercomputers, and what we have discussed at the forum will be duly delivered to the government to help them develop policies necessary to build the computers.”
2015.12.16 View 7426 -
Professor Duck-Joo Lee Receives the Achievement Award in the Asian-Australian Rotorcraft Forum 2015
Professor Duck-Joo Lee of the Aerospace Engineering Department at KAIST received the achievement award in ARF (Asian-Australian Rotorcraft Forum) 2015. In ARF, companies such as Bell Helicopter and Airbus Helicopter gather and share their technological discoveries.
Professor Lee was elected as Chairman of the first ARF to oversee the organization of its forum as well as exhibitions, and his effort towards advancing rotorcraft was recognized.
Professor Lee said, “I hope that research findings of many scholars will be applied to the domestic air transportation businesses.” He added, “More companies in the field should enter the global market.”
Professor Lee started his career as a researcher in NASA Ames Research Center. He is an expert in the fields of jet engines and aeroacoustics.
2015.12.08 View 6925 -
KAIST and Charles University Agree to Cooperate
KAIST and Charles University in Prague, the Czech Republic, agreed to cooperate in research and education.
President Steve Kang of KAIST (pictured on the left) and Rector Tomáš Zima of Charles University signed the agreement on December 2, 2015, at the Hilton Hotel in Prague.
Minster Yang-Hee Choi of Science, ICT and Future Planning of the Republic of Korea and Minister Kateřina Valachová of Education, Youth and Sports of the Czech Republic also joined the signing ceremony.
Under the agreement, the two institutions will exchange students and researchers, as well as implement joint research programs.
President Kang said, “We are pleased to work with one of the most prestigious universities in the Czech Republic and hope to build a good partnership in the years ahead.”
Founded in 1348, Charles University in Prague is the oldest and largest university in the Czech Republic. The university received two Nobel prizes in physiology or medicine and in chemistry in 1947 and 1959, respectively.
2015.12.03 View 7712