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Ligand Recognition Mechanism of Protein Identified
Professor Hak-Sung Kim
-“Solved the 50 year old mystery of how protein recognises and binds to ligands”
- Exciting potential for understanding life phenomena and the further development of highly effective therapeutic agent development
KAIST’s Biological Science Department’s Professor Hak-Sung Kim, working in collaboration with Professor Sung-Chul Hong of Department of Physics, Seoul National University, has identified the mechanism of how the protein recognizes and binds to ligands within the human body.
The research findings were published in the online edition of Nature Chemical Biology (March 18), which is the most prestigious journal in the field of life science.
Since the research identified the mechanism, of which protein recognises and binds to ligands, it will take an essential role in understanding complex life phenomenon by understanding regulatory function of protein.
Also, ligand recognition of proteins is closely related to the cause of various diseases. Therefore the research team hopes to contribute to the development of highly effective treatments.
Ligands, well-known examples include nucleic acid and proteins, form the structure of an organism or are essential constituents with special functions such as information signalling.
In particular, the most important role of protein is recognising and binding to a particular ligand and hence regulating and maintaining life phenomena. The abnormal occurrence of an error in recognition of ligands may lead to various diseases.
The research team focused on the repetition of change in protein structure from the most stable “open form” to a relatively unstable “partially closed form”.
Professor Kim’s team analysed the change in protein structure when binding to a ligand on a molecular level in real time to explain the ligand recognition mechanism.
The research findings showed that ligands prefer the most stable protein structure. The team was the first in the world to identify that ligands alter protein structure to the most stable, the lowest energy level, when it binds to the protein.
In addition, the team found that ligands bind to unstable partially-closed forms to change protein structure.
The existing models to explain ligand recognition mechanism of protein are “Induced Custom Model”, which involves change in protein structure in binding to ligands, and the “Structure Selection Model”, which argues that ligands select and recognise only the best protein structure out of many. The academic world considers that the team’s research findings have perfectly proved the models through experiments for the first time in the world.
Professor Kim explained, “In the presence of ligands, there exists a phenomenon where the speed of altering protein structure is changed. This phenomenon is analysed on a molecular level to prove ligand recognition mechanism of protein for the first time”. He also said, “The 50-year old mystery, that existed only as a hypothesis on biology textbooks and was thought never to be solved, has been confirmed through experiments for the first time.”
Figure 1: Proteins, with open and partially open form, recognising and binding to ligands.
Figure 2: Ligands temporarily bind to a stable protein structure, open form, which changes into the most stable structure, closed form. In addition, binding to partially closed form also changes protein structure to closed form.
2013.04.01 View 10910 -
Launched the Saudi Aramco-KAIST CO2 Management Center in Korea
KAIST and Saudi Aramco, a global energy and petrochemicals enterprise, signed on February 20, 2013 the Master Research and Collaboration Agreement (the Agreement) on joint collaborations in research and development of carbon management between the two entities.
The Agreement was subsequently concluded upon the signing of the Memorandum of Understanding (MOU) between KAIST and Saudi Aramco, dated January 7th, 2013. In the Agreement, the two organizations specified terms and conditions necessary to conduct joint research projects and stipulated governing body for the operation of the Saudi Aramco-KAIST CO2 Management Center.
KAIST and Saudi Aramco, a national oil company for Saudi Arabia, entered into the MOU, in which the two parties shared a common interest in addressing the issue of CO2 capture, CO2storage, CO2 avoidance using efficiency improvements, and converting CO2 into useful chemicals and other materials, and agreed to “create a major research center for CO2” in Korea.
As envisioned by the MOU and its subsequent agreement, KAIST and Saudi Aramco decided to operate an interim office of the Saudi Aramco-KAIST CO2 Management Center at KAIST campus in Daejeon, Korea, pending the establishment of the research center. The full-fledged, independent research facility will be built at a location and during a period to be agreed between the two parties.
Following the signing of the Agreement, there was a celebration event taken place, including a signboard hanging ceremony for the interim research office. A 10-member delegation from Saudi Aramco, which was headed by Vice President of Engineering Services Samir Al-Tubayyeb, Dr. Nam-Pyo Suh, former president of KAIST, Vice President of Research at KAIST Kyung-Wook Paik, and senior representatives from Korean oil and petrochemical companies such as S-Oil, Lotte Chemicals, SK Innovation, and STX attended the event.
Kyung-Wook Paik, Vice President of Research at KAIST, said,
“In order to help find solutions to carbon management, KAIST and Saudi Aramco will facilitate to exchange each party’s complementary technical expertise, gain insight into new research fields, and have access to key sources of talent, while promoting innovation for technology solutions and contributing to the lifelong learning agenda of both organizations.”
Samir Al-Tubayyeb, Vice President of Engineering Services at Saudi Aramco, added that “As a world-leading oil and gas company, Saudi Aramco’s mission is to promote the continued use of safe, environmentally-friendly petroleum products with a vision to becoming a global leader in research and technology. Building a strong and cooperative relationship with KAIST in our endeavor to search for alternative ways to better utilization of fossil fuels will expedite the creation of opportunities to make the world environmentally safer and sustainable.”
KAIST and Saudi Aramco will each chip in a maximum of USD 5 million annually for the establishment and operation of the Saudi Aramco-KAIST CO2 Management Center during the initial term of the Master Research and Collaboration Agreement, which starts in 2013 and continues through 2018.
2013.03.19 View 13536 -
KAIST Inaugurates Its 15th President
President Sung-Mo “Steve” Kang praised what KAIST has achieved as a powerful engine for the economic and industrial advancement of Korea over the past 41 years, while pledging to continue its endeavor “to go above and beyond its present accomplishments.”
KAIST inaugurated its 15th president, Sung-Mo “Steve” Kang, on February 27, 2013, in a ceremony at the auditorium of its main campus in Daejeon, South Korea. President Kang delivered his inauguration speech to 1,000 distinguished guests from government and public offices and the nation’s science community, including Chairman Myung Oh of the KAIST Board of Trustees, Former Presidents of KAIST Soon-Dal Choi and Chang-Sun Hong, Former National Assembly Member Yong-Kyung Lee, and members of the university.
In his speech, President Kang recalled that he had formed a strong bond with KAIST over many years, before assuming the presidency and extolled the university’s contribution to Korea’s current economic prowess. Referring to the “growing pains” that KAIST has experienced amid its successes, he vowed to unify the university community to take another leap forward:
We must ease the pain through trust and consideration for one another and join in unity to take steps toward the brighter tomorrow of KAIST. I humbly seek your help and pledge to put forth my utmost effort as a servant and leader.
Speaking of KAIST’s importance to the Korean nation, President Kang said, “Korea, as a nation lacking a deep pool of natural resources, must find innovative ways to compete globally to ensure the prosperity and well-being of its people.” He emphasized KAIST’s role as a catalyst to “lead the nation toward the frontiers of science and technology with fervor and responsibility.”
In order to become a global leader in higher learning and contribute to the advancement of science and technology in Korea and beyond, President Kang said that KAIST must do well in five areas with letters matching those of its own acronym: Knowledge creation, Advancement on all fronts, Integrity, Sustainability, and Trust.
In knowledge creation, the president pointed out the necessity of collaboration, student-centered and faculty-led research programs, and interdisciplinary research. For advancement on all fronts, he proposed redrafting KAIST’s future blueprint by consulting with all of its constituents and the Board of Trustees to improve the overall efficiency of the university.
President Kang added that KAIST should uphold integrity in all research publications, financial management, and human relations to withstand unforeseen challenges and problems and that is should seek sustainable value for education and research, not becoming overly driven by short-term research goals. Last, he said that KAIST must be an institution trusted by the public and KAIST faculty, students, and staff. This culture of trust can be made possible, he added, when the members of the university do their best to create an environment of understanding and caring for each other.
President Kang concluded his remarks by promising that he would always open his door and welcome anyone for visits, discussions, and sharing. Known as “Captain Smooth” for the well-rounded, warm, yet decisive leadership style that he showed during his chancellorship at the University of California, Merced, President Kang now pledges to guide KAIST to become better and stronger in the next four years. For a full transcript of the speech, download the PDF file below.
2013.03.13 View 7769 -
President Sung-Mo 'Steve' Kang Welcomed the Class of 2017
KAIST held its 2013 Opening Convocation on Monday, March 4, 2013, on its campus in Daejeon, South Korea, with 717 newly arrived freshmen and their parents, family, and friends.
In his welcoming speech, President Sung-Mo “Steve” Kang congratulated the students on their admission to KAIST after a rigorous selection process. President Kang advised the freshmen to follow four principles for successful college lives: development of good character and integrity, acquisition of diverse knowledge and experiences, global awareness, and establishment of fellowship and friendship. For a full transcript of the speech, download the PDF file below.
2013.03.13 View 6285 -
Op-Ed by Professor David Helfman: Global Science and Education in Korea for the 21st Century
Professor David Helfman from the Department of Biological Sciences and Graduate School of Nanoscience and Technology contributed an op-ed, “Global Science and Education in Korea for the 21st Century, to the Korea Herald on February 20, 2013. For the article, please click the link below:
http://www.koreaherald.com/view.php?ud=20130220000623.
2013.02.26 View 9969 -
Synthesis of a New Organic Supermolecule Succeeded
From left to right: Prof.Stoddart, Prof.Goddard and Prof.Jang Wook Choi
KAIST EEWS graduate school’s research team led by Prof. Stoddart, Prof. Goddard and Prof. Jang Wook Choi has succeeded the synthesis of a new organic supermolecule that is stable in a radical condition under room temperature.
Prof. Stoddart, who mainly led this research, is the world’s great scholar on orgaic molecular structure especially on catenane with an interconnection of several ring structures. Catenane is originated from Latin “catenane” referring to “chain”. The brief structure of the synthesized catenane is as following:
Usually radicals are known to be unstable since they are electronically neutral and have very high reactivity. However, the radicals from this research showed air- and water- stability. It also showed a reversible change in oxidation number from o to +8 through chemical/electrochemical oxidation-reduction reaction. The phenomenon where paramagnetic and diamagnetic characteristics change according to the oxidation number has also been observed.
Thus, the research like this - on the molecules showing various characteristics with stable radical - is expected to give a new direction to the next-generation electromemory system, semiconductor and energy storage system research.
Meanwhile, this research, led by Prof.Stoddart team with Prof.Goddard and Prof. Jang Wook Choi’s team, is conducted under the support of Science and Technology’s World Class University project by Ministry of Education and published in ‘Science’ on 25th of Jan.
2013.02.24 View 10577
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A Substance with Amazingly Improved Efficiency of Capturing Carbon Dioxides Developed
From left to right: Prof.Ali Coskun, Prof. Cafer T. Yavuz and Prof. Yousung Jung
- Selectivity of CO2 increased by 300 times in comparison to nitrogen, published in Nature Communications-
KAIST EEWS graduate school’s joint research team led by Prof. Cafer T. Yavuz, Prof. Ali Coskun, and Prof. Yousung Jung has developed the world"s most efficient CO2 absorbent that has 300 times higher carbon dioxide selectivity in comparison to nitrogen.
Recently, the importance of CCS* technology, which is about capturing, storing and treating carbon dioxides, has begun to emerge world-widely as a practical alternative for the response to climate change.
* CCS : Carbon Capture and sequestration
Current carbon dioxide capturing technologies are wet capturing using liquid absorbent, dry capturing using solid absorbent and separation-membrane capturing using a thin membrane like a film.
For the places like power plant and forge, where the emission of carbon dioxides is huge, the main task is to maintain the capturing efficiency under extremely hot and humid conditions.
The previously studied dry absorbents, such as MOF or zeolite, had the disadvantages of instability in moist conditions and expensive cost for synthesis.
On the other hand, the research team"s newly discovered dry absorbent, named ‘Azo-COP’, can be synthesized without any expensive catalysts so the production cost is very low. It is also stable under hot and humid conditions.
COP is a structure consisting of simple organic molecules combined into porous polymer and is the first dry carbon dioxide capturing material developed by this research team.
The research team introduced an additional functional group called "Azo" to the substance, so that it can selectively capture carbon dioxides among the mixture of gas.
Azo-COP, which includes ‘Azo’ functional group, is manufactured easily by using common synthesis methods, and impurities are removed simply by using cheap solvents like water and acetone instead of expensive catalysts. As a result, the manufacturing cost has lowered drastically.
Especially, Azo-COP is combined with carbon dioxides by weak attraction force rather than chemical attraction so the recycling energy cost for the absorbent can be reduced innovatively, and it is expected to be used for capturing substances other than carbon dioxides in various areas as it is stable under extreme conditions even under 350 degrees Celsius.
This research is supported by Korea Carbon Capture&Sequestration R&D Center(Head: Sangdo Park) and KAIST EEWS planning group.
Prof. Cafer T. Yavuz and Prof. Ali Coskun said that “when Azo-COP is used for separation of CO2 and N2, the capturing efficiency has increased by hundred times.” He continued “This substance does not need any catalysts and has great chemical characteristics like water stability and structure stability so is expected to be used in various fields including carbon dioxides capturing”
Meanwhile, this research is published in ‘Nature’s stablemate ‘Nature Communications’ on 15th of Jan.
2013.02.24 View 11895
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Online Article on President Sung-Mo 'Steve' Kang by California Council on Science and Technology (CCST)
The California Council on Science and Technology (CCST), an independent, not-for-profit organization established by the mandate of California Legislature in 1988, is designed to offer expert advice to the California state government and recommend solutions to science and technology-related policy issues.
Over the past three years, President Sung-Mo “Steve” Kang has served as a member of CCST Council, an assembly of corporate CEOs, academicians, scientists, and scholars of the highest distinction.
On February 21, 2013, CCST posted on its website the announcement of Council Member Sung-Mo “Steve” Kang as President of KAIST along with his personal comments on his move to KAIST and its presidency. For the online article, please visit: http://www.ccst.us/news/2013/0221KAIST.php
2013.02.23 View 7910
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Prof. Jong Chul Ye Appointed as the Editor of IEEE TIP
Professor Jong Chul Ye
KAIST Bio & brain engineering department’s Professor Jong Chul Ye has been appointed as the editor of the "IEEE image processing transactions (IEEE TIP, IEEE Transaction on Image Processing)’, a prominent journal in the sector of imaging and medical image processing.
Professor Ye will act as the editor in the field of medical imaging from February 2013 to January 2016, during which he will participate in examining thesis, establishing the direction of the journal and more.
Professor Jong Chul Ye was recognized for his notable work in the field of medical imaging research using compressed sensing for the development of a high resolution medical image reconstruction techniques. This technique has pioneered a new area that is applicable in magnetic resonance imaging (MRI), computed tomography (CT), positron emission Camcorder (PET) and brain imaging.
On the other hand, “IEEE TIP” was first published in 1992 and is currently the world’s leading authority in the field of image processing, medical imaging, image acquisition, compression and output.
2013.02.21 View 9881
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New BioFactory Technique Developed using sRNAs
Professor Sang Yup Lee
- published on the online edition of Nature Biotechnology. “Expected as a new strategy for the bio industry that may replace the chemical industry.”-
KAIST Chemical & Biomolecular engineering department’s Professor Sang Yup Lee and his team has developed a new technology that utilizes the synthetic small regulatory RNAs (sRNAs) to implement the BioFactory in a larger scale with more effectiveness.
* BioFactory: Microbial-based production system which creates the desired compound in mass by manipulating the genes of the cell.
In order to solve the problems of modern society, such as environmental pollution caused by the exhaustion of fossil fuels and usage of petrochemical products, an eco-friendly and sustainable bio industry is on the rise. BioFactory development technology has especially attracted the attention world-wide, with its ability to produce bio-energy, pharmaceuticals, eco-friendly materials and more.
For the development of an excellent BioFactory, selection for the gene that produces the desired compounds must be accompanied by finding the microorganism with high production efficiency; however, the previous research method had a complicated and time-consuming problem of having to manipulate the genes of the microorganism one by one.
Professor Sang Yup Lee’s research team, including Dr. Dokyun Na and Dr. Seung Min Yoo, has produced the synthetic sRNAs and utilized it to overcome the technical limitations mentioned above.
In particular, unlike the existing method, this technology using synthetic sRNAs exhibits no strain specificity which can dramatically shorten the experiment that used to take months to just a few days.
The research team applied the synthetic small regulatory RNA technology to the production of the tyrosine*, which is used as the precursor of the medicinal compound, and cadaverine**, widely utilized in a variety of petrochemical products, and has succeeded developing BioFactory with the world’s highest yield rate (21.9g /L, 12.6g / L each).
*tyrosine: amino acid known to control stress and improve concentration
**cadaverine: base material used in many petrochemical products, such as polyurethane
Professor Sang Yup Lee highlighted the significance of this research: “it is expected the synthetic small regulatory RNA technology will stimulate the BioFactory development and also serve as a catalyst which can make the chemical industry, currently represented by its petroleum energy, transform into bio industry.”
The study was carried out with the support of Global Frontier Project (Intelligent Bio-Systems Design and Synthesis Research Unit (Chief Seon Chang Kim)) and the findings have been published on January 20th in the online edition of the worldwide journal Nature Biotechnology.
2013.02.21 View 10586
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Professor Shin In Shik First in Asia to receive Excellent Dissertation Award from IEEE RTSS
The research team lead by Professor Shin In Shik (Department of Computer Science) received the Excellent Dissertation Awardy in the IEEE RTSS out of 157 dissertations.
It is the first time a Professor under an institute in the Asia region received the Award in the RTSS field during its 33 year history.
Professor Shin had already received an Excellent Dissertation Award as a Ph.D. candidate at the University of Pennsylvania. Thus Professor Shin became the first and only scientist to receive the Award twice.
Professor Shin has successfully defined the scheduling method of the multicore processor which was regarded as the problem in the field of RTSS for the past decade.
Professor Shin has suggested new criteria for sorting real time tasks in parallel thereby suggesting a new scheduling method that surpasses current scheduling methods. The results are anticipated to provide new perspectives in the field of RTSS using multicore processors.
2013.01.22 View 8070
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KAIST OLEV (On-Line Electric Vehicle) to begin operation!
An On-Line Electric Vehicle (OLEV) that can charge during travel will be put into service for the first time in the world on normal roads.
From July of this year 2 OLEV buses will undergo trial operations in the city of Gumi.
The trial route spans 24km from Gumi station and the region of In-Dong and the establishment of the route is expected to be of a 4.8billion Won scale. The start of the infrastructure construction will start on February and operation will start in July.
KAIST had held sessions in October of last year to local governments and had a follow up OLEV suitability evaluation to those local governments expressing interest.
The city of Gumi was elected due to its good electrical infrastructure and an administrative willingness to match.
The OLEV developed by KAIST is an environmentally friendly vehicle that allows the transfer of electrical power using magnetic fields imbedded in the roads.
Ordinary electric vehicles require frequent visits to replenish their power which gives the OLEV a comparative advantage as it can charge while on the road. The ability to charge whilst on the road means that the OLEV requires a smaller battery than the ordinary electrical vehicle resulting in lower prices and weight.
The OLEV development commenced at KAIST in 2009 and in 2010 most of the core technologies required to realize the OLEV was developed and verified. Finally in 2012 steps were taken that will allow the commercialization of the OLEV.
And in October of last year KAIST OLEV accomplished 75% power transfer efficiency that allowed a system that can be commercialized.
The KAIST OLEV was named top 50 inventions in 2010 by Time Magazine.
2013.01.22 View 10722