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New Structural Insight into Neurodegenerative Disease
A research team from the Korea Advanced Institute of Science and Technology (KAIST) released their results on the structure and molecular details of the neurodegenerative disease-associated protein Ataxin-1. Mutations in Ataxin-1 cause the neurological disease, Spinocerebella Ataxia Type 1 (SCA1), which is characterized by a loss of muscular coordination and balance (ataxia), as is seen in Parkinson’s, Alzheimer’s, and Huntington’s diseases.
SCA1-causing mutations in the ATAXIN1 gene alter the length of a glutamine stretch in the Ataxin-1 protein. The research team provides the first structural insight into the complex formation of ATAXIN-1 with its binding partner, Capicua (CIC). The team, led by Professor Ji-Joon Song from the Department of Biological Sciences at KAIST, solved the structure of Ataxin-1 and CIC complex in atomic level revealing molecular details of the interaction between Ataxin-1 and CIC.
Professor Song explained his recent research work,
“We are able to see the intricate process of complex formation and reconfiguration of the two proteins when they interact with each other. Our work, we expect, will provide a new therapeutic target to modulate SCA1 neurodegenerative disease.”
Understanding structural and molecular details of proteins at the atomic level will help researchers to track the molecular pathogenesis of the disease and, ultimately, design targeted therapies or treatments for patients, rather than just relieving the symptoms of diseases.
Professor Song’s research paper, entitled “Structural Basis of Protein Complex Formation and Reconfiguration by Polyglutamine Disease Protein ATAXIN-1 and Capicua,” will be published in the March 15th issue of Genes & Development (www.genesdev.org).
Complex Formation and Reconfiguration of ATAXIN-1 and Capicua
The complex formation between a polyglutamine disease protein, ATXIN-1 and the transcriptional repressor Capicua (CIC) plays a critical role in SCA 1 pathogenesis. The image shows that the homodimerization of ATXIN-1 (yellow and red) is disrupted upon binding of CIC (blue). Furthermore, the binding of CIC to the ATXIN-1 induces a new form of ATXIN-1 dimerization mediated by CICs (ATXIN-1 AXH domains are shown in yellow and red, and CIC peptides shown in blue and white).
2013.04.02 View 8530 -
The new era of personalized cancer diagnosis and treatment
Professor Tae-Young Yoon
- Succeeded in observing carcinogenic protein at the molecular level
- “Paved the way to customized cancer treatment through accurate analysis of carcinogenic protein”
The joint KAIST research team of Professor Tae Young Yoon of the Department of Physics and Professor Won Do Huh of the Department of Biological Sciences have developed the technology to monitor characteristics of carcinogenic protein in cancer tissue – for the first time in the world.
The technology makes it possible to analyse the mechanism of cancer development through a small amount of carcinogenic protein from a cancer patient. Therefore, a personalised approach to diagnosis and treatment using the knowledge of the specific mechanism of cancer development in the patient may be possible in the future.
Until recently, modern medicine could only speculate on the cause of cancer through statistics. Although developed countries, such as the United States, are known to use a large sequencing technology that analyses the patient’s DNA, identification of the interactions between proteins responsible for causing cancer remained an unanswered question for a long time in medicine.
Firstly, Professor Yoon’s research team has developed a fluorescent microscope that can observe even a single molecule. Then, the “Immunoprecipitation method”, a technology to extract a specific protein exploiting the high affinity between antigens and antibodies was developed. Using this technology and the microscope, “Real-Time Single Molecule co-Immunoprecipitation Method” was created. In this way, the team succeeded in observing the interactions between carcinogenic and other proteins at a molecular level, in real time.
To validate the developed technology, the team investigated Ras, a carcinogenic protein; its mutation statistically is known to cause around 30% of cancers.
The experimental results confirmed that 30-50% of Ras protein was expressed in mouse tumour and human cancer cells. In normal cells, less than 5% of Ras protein was expressed. Thus, the experiment showed that unusual increase in activation of Ras protein induces cancer.
The increase in the ratio of active Ras protein can be inferred from existing research data but the measurement of specific numerical data has never been done before.
The team suggested a new molecular level diagnosis technique of identifying the progress of cancer in patients through measuring the percentage of activated carcinogenic protein in cancer tissue.
Professor Yoon Tae-young said, “This newly developed technology does not require a separate procedure of protein expression or refining, hence the existing proteins in real biological tissues or cancer cells can be observed directly.” He also said, “Since carcinogenic protein can be analyzed accurately, it has opened up the path to customized cancer treatment in the future.”
“Since the observation is possible on a molecular level, the technology confers the advantage that researchers can carry out various examinations on a small sample of the cancer patient.” He added, “The clinical trial will start in December 2012 and in a few years customized cancer diagnosis and treatment will be possible.”
Meanwhile, the research has been published in Nature Communications (February 19). Many researchers from various fields have participated, regardless of the differences in their speciality, and successfully produced interdisciplinary research. Professor Tae Young Yoon of the Department of Physics and Professors Dae Sik Lim and Won Do Huh of Biological Sciences at KAIST, and Professor Chang Bong Hyun of Computational Science of KIAS contributed to developing the technique.
Figure 1: Schematic diagram of observed interactions at the molecular level in real time using fluorescent microscope. The carcinogenic protein from a mouse tumour is fixed on the microchip, and its molecular characteristics are observed live.
Figure 2: Molecular interaction data using a molecular level fluorescent microscope. A signal in the form of spike is shown when two proteins combine. This is monitored live using an Electron Multiplying Charge Coupled Device (EMCCD). It shows signal results in bright dots.
An organism has an immune system as a defence mechanism to foreign intruders. The immune system is activated when unwanted pathogens or foreign protein are in the body. Antibodies form in recognition of the specific antigen to protect itself. Organisms evolved to form antibodies with high specificity to a certain antigen. Antibodies only react to its complementary antigens. The field of molecular biology uses the affinity between antigens and antibodies to extract specific proteins; a technology called immunoprecipitation. Even in a mixture of many proteins, the protein sought can be extracted using antibodies. Thus immunoprecipitation is widely used to detect pathogens or to extract specific proteins.
Technology co-IP is a well-known example that uses immunoprecipitation. The research on interactions between proteins uses co-IP in general. The basis of fixing the antigen on the antibody to extract antigen protein is the same as immunoprecipitation. Then, researchers inject and observe its reaction with the partner protein to observe the interactions and precipitate the antibodies. If the reaction occurs, the partner protein will be found with the antibodies in the precipitations. If not, then the partner protein will not be found. This shows that the two proteins interact.
However, the traditional co-IP can be used to infer the interactions between the two proteins although the information of the dynamics on how the reaction occurs is lost. To overcome these shortcomings, the Real-Time Single Molecule co-IP Method enables observation on individual protein level in real time. Therefore, the significance of the new technique is in making observation of interactions more direct and quantitative.
Additional Figure 1: Comparison between Conventional co-IP and Real-Time Single Molecule co-IP
2013.04.01 View 17182 -
KAIST and Saudi Aramco agreed to establish a joint CO2 research center in Korea
The Korea Advanced Institute of Science and Technology (KAIST) and Saudi Aramco, a global energy and petrochemicals enterprise, signed a memorandum of understanding (MOU) on January 6, 2013 in Dhahran, Saudi Arabia and pledged to jointly collaborate in research and development of innovative technologies and solutions to address the world"s energy challenges.
Under the MOU, the two entities agreed to establish a research center, Saudi Aramco-KAIST CO2 Research Center, near KAIST"s main campus in Daejeon, Korea. The research center, to be jointly managed by KAIST and Saudi Aramco, will foster and facilitate research collaborations in areas such as tackling carbon dioxide (CO2) emissions by removal or capture of CO2, conversing CO2 into useful products, developing efficiency improvements in energy production, sharing carbon management technologies, establishing exchange programs, and conducting joint projects.
According to Saudi Aramco, the company"s collaboration with KAIST is the first partnership established in Asia. Khalid A. Al-Falih, President and CEO of Saudi Aramco, said,
"The CO2 Research Center represents a major step in Saudi Aramco"s research and technology strategy to partner with top global institutions to help address and find sustainable solutions to the world’s energy challenge both domestically and internationally."
2013.03.19 View 9149 -
KAIST Develops Wireless Power Transfer Technology for High Capacity Transit
KAIST and the Korea Railroad Research Institute (KRRI) have developed a wireless power transfer technology that can be applied to high capacity transportation systems such as railways, harbor freight, and airport transportation and logistics. The technology supplies 60 kHz and 180 kW of power remotely to transport vehicles at a stable, constant rate.
KAIST and KRRI successfully showcased the wireless power transfer technology to the public on February 13, 2013 by testing it on the railroad tracks at Osong Station in Korea. Originally, this technology was developed as part of an electric vehicle system introduced by KAIST in 2011 known as the On-line Electric Vehicle (OLEV).
OLEV does not need to be parked at a charging station to have a fully powered battery. It gets charged while running, idling, and parking, enabling a reduction in size of the reserve battery down to one-fifth of the battery on board a regular electric car. The initial models of OLEV, a bus and a tram, receive 20 kHz and 100 kW power at an 85% transmission efficiency rate while maintaining a 20cm air gap between the underbody of vehicle and the road surface. OLEV complies with the national and international standards of 62.5 mG, a safety net for electromagnetic fields. In July 2013, for the first time since its development, OLEV will run on a regular road, an inner city route in the city of Gumi, requiring 40 minutes of driving each way.
Today’s technology demonstration offers further support that OLEV can be utilized for large-scale systems. Professor Dong-Ho Cho, Director of Center for Wireless Power Transfer Technology Business Development at KAIST, explained the recent improvements to OLEV:
“We have greatly improved the OLEV technology from the early development stage by increasing its power transmission density by more than three times. The size and weight of the power pickup modules have been reduced as well. We were able to cut down the production costs for major OLEV components, the power supply, and the pickup system, and in turn, OLEV is one step closer to being commercialized.”
If trains receive power wirelessly, the costs of railway wear and tear will be dramatically reduced. There will be no power rails, including electrical poles, required for the establishment of a railway system, and accordingly, lesser space will be needed. Tunnels will be built on a smaller scale, lowering construction costs. In addition, it will be helpful to overcome major obstacles that discourage the construction of high speed railway systems such as noise levels and problems in connecting pantograph and power rails.
KAIST and KRRI plan to apply the wireless power transfer technology to trams in May and high speed trains in September.
2013.03.19 View 11974 -
Launched the Saudi Aramco-KAIST CO2 Management Center in Korea
KAIST and Saudi Aramco, a global energy and petrochemicals enterprise, signed on February 20, 2013 the Master Research and Collaboration Agreement (the Agreement) on joint collaborations in research and development of carbon management between the two entities.
The Agreement was subsequently concluded upon the signing of the Memorandum of Understanding (MOU) between KAIST and Saudi Aramco, dated January 7th, 2013. In the Agreement, the two organizations specified terms and conditions necessary to conduct joint research projects and stipulated governing body for the operation of the Saudi Aramco-KAIST CO2 Management Center.
KAIST and Saudi Aramco, a national oil company for Saudi Arabia, entered into the MOU, in which the two parties shared a common interest in addressing the issue of CO2 capture, CO2storage, CO2 avoidance using efficiency improvements, and converting CO2 into useful chemicals and other materials, and agreed to “create a major research center for CO2” in Korea.
As envisioned by the MOU and its subsequent agreement, KAIST and Saudi Aramco decided to operate an interim office of the Saudi Aramco-KAIST CO2 Management Center at KAIST campus in Daejeon, Korea, pending the establishment of the research center. The full-fledged, independent research facility will be built at a location and during a period to be agreed between the two parties.
Following the signing of the Agreement, there was a celebration event taken place, including a signboard hanging ceremony for the interim research office. A 10-member delegation from Saudi Aramco, which was headed by Vice President of Engineering Services Samir Al-Tubayyeb, Dr. Nam-Pyo Suh, former president of KAIST, Vice President of Research at KAIST Kyung-Wook Paik, and senior representatives from Korean oil and petrochemical companies such as S-Oil, Lotte Chemicals, SK Innovation, and STX attended the event.
Kyung-Wook Paik, Vice President of Research at KAIST, said,
“In order to help find solutions to carbon management, KAIST and Saudi Aramco will facilitate to exchange each party’s complementary technical expertise, gain insight into new research fields, and have access to key sources of talent, while promoting innovation for technology solutions and contributing to the lifelong learning agenda of both organizations.”
Samir Al-Tubayyeb, Vice President of Engineering Services at Saudi Aramco, added that “As a world-leading oil and gas company, Saudi Aramco’s mission is to promote the continued use of safe, environmentally-friendly petroleum products with a vision to becoming a global leader in research and technology. Building a strong and cooperative relationship with KAIST in our endeavor to search for alternative ways to better utilization of fossil fuels will expedite the creation of opportunities to make the world environmentally safer and sustainable.”
KAIST and Saudi Aramco will each chip in a maximum of USD 5 million annually for the establishment and operation of the Saudi Aramco-KAIST CO2 Management Center during the initial term of the Master Research and Collaboration Agreement, which starts in 2013 and continues through 2018.
2013.03.19 View 13026 -
President Sung-Mo 'Steve' Kang Welcomed the Class of 2017
KAIST held its 2013 Opening Convocation on Monday, March 4, 2013, on its campus in Daejeon, South Korea, with 717 newly arrived freshmen and their parents, family, and friends.
In his welcoming speech, President Sung-Mo “Steve” Kang congratulated the students on their admission to KAIST after a rigorous selection process. President Kang advised the freshmen to follow four principles for successful college lives: development of good character and integrity, acquisition of diverse knowledge and experiences, global awareness, and establishment of fellowship and friendship. For a full transcript of the speech, download the PDF file below.
2013.03.13 View 6142 -
A Substance with Amazingly Improved Efficiency of Capturing Carbon Dioxides Developed
From left to right: Prof.Ali Coskun, Prof. Cafer T. Yavuz and Prof. Yousung Jung
- Selectivity of CO2 increased by 300 times in comparison to nitrogen, published in Nature Communications-
KAIST EEWS graduate school’s joint research team led by Prof. Cafer T. Yavuz, Prof. Ali Coskun, and Prof. Yousung Jung has developed the world"s most efficient CO2 absorbent that has 300 times higher carbon dioxide selectivity in comparison to nitrogen.
Recently, the importance of CCS* technology, which is about capturing, storing and treating carbon dioxides, has begun to emerge world-widely as a practical alternative for the response to climate change.
* CCS : Carbon Capture and sequestration
Current carbon dioxide capturing technologies are wet capturing using liquid absorbent, dry capturing using solid absorbent and separation-membrane capturing using a thin membrane like a film.
For the places like power plant and forge, where the emission of carbon dioxides is huge, the main task is to maintain the capturing efficiency under extremely hot and humid conditions.
The previously studied dry absorbents, such as MOF or zeolite, had the disadvantages of instability in moist conditions and expensive cost for synthesis.
On the other hand, the research team"s newly discovered dry absorbent, named ‘Azo-COP’, can be synthesized without any expensive catalysts so the production cost is very low. It is also stable under hot and humid conditions.
COP is a structure consisting of simple organic molecules combined into porous polymer and is the first dry carbon dioxide capturing material developed by this research team.
The research team introduced an additional functional group called "Azo" to the substance, so that it can selectively capture carbon dioxides among the mixture of gas.
Azo-COP, which includes ‘Azo’ functional group, is manufactured easily by using common synthesis methods, and impurities are removed simply by using cheap solvents like water and acetone instead of expensive catalysts. As a result, the manufacturing cost has lowered drastically.
Especially, Azo-COP is combined with carbon dioxides by weak attraction force rather than chemical attraction so the recycling energy cost for the absorbent can be reduced innovatively, and it is expected to be used for capturing substances other than carbon dioxides in various areas as it is stable under extreme conditions even under 350 degrees Celsius.
This research is supported by Korea Carbon Capture&Sequestration R&D Center(Head: Sangdo Park) and KAIST EEWS planning group.
Prof. Cafer T. Yavuz and Prof. Ali Coskun said that “when Azo-COP is used for separation of CO2 and N2, the capturing efficiency has increased by hundred times.” He continued “This substance does not need any catalysts and has great chemical characteristics like water stability and structure stability so is expected to be used in various fields including carbon dioxides capturing”
Meanwhile, this research is published in ‘Nature’s stablemate ‘Nature Communications’ on 15th of Jan.
2013.02.24 View 11471
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Online Article on President Sung-Mo 'Steve' Kang by California Council on Science and Technology (CCST)
The California Council on Science and Technology (CCST), an independent, not-for-profit organization established by the mandate of California Legislature in 1988, is designed to offer expert advice to the California state government and recommend solutions to science and technology-related policy issues.
Over the past three years, President Sung-Mo “Steve” Kang has served as a member of CCST Council, an assembly of corporate CEOs, academicians, scientists, and scholars of the highest distinction.
On February 21, 2013, CCST posted on its website the announcement of Council Member Sung-Mo “Steve” Kang as President of KAIST along with his personal comments on his move to KAIST and its presidency. For the online article, please visit: http://www.ccst.us/news/2013/0221KAIST.php
2013.02.23 View 7580
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Prof. Jong Chul Ye Appointed as the Editor of IEEE TIP
Professor Jong Chul Ye
KAIST Bio & brain engineering department’s Professor Jong Chul Ye has been appointed as the editor of the "IEEE image processing transactions (IEEE TIP, IEEE Transaction on Image Processing)’, a prominent journal in the sector of imaging and medical image processing.
Professor Ye will act as the editor in the field of medical imaging from February 2013 to January 2016, during which he will participate in examining thesis, establishing the direction of the journal and more.
Professor Jong Chul Ye was recognized for his notable work in the field of medical imaging research using compressed sensing for the development of a high resolution medical image reconstruction techniques. This technique has pioneered a new area that is applicable in magnetic resonance imaging (MRI), computed tomography (CT), positron emission Camcorder (PET) and brain imaging.
On the other hand, “IEEE TIP” was first published in 1992 and is currently the world’s leading authority in the field of image processing, medical imaging, image acquisition, compression and output.
2013.02.21 View 9435
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KAIST welcomes Dr. Sung-Mo
The KAIST Board of Trustees appointed Distinguished Chair Professor Sung-Mo "Steve" Kang of Electrical Engineering at the University of California, Santa Cruz, as the 15th President of KAIST on January 31, 2013. President Kang has begun the duties of his office on February 23, 2013.
An acclaimed scientist, professor, and entrepreneur in the field of integrated-circuit design, Dr. Sung-Mo "Steve" Kang has earned a worldwide reputation for his outstanding research achievements. He led the development of the world’s first full 32-bit CMOS microprocessor chips and their peripheral chips, as well as designed satellite-based private communication networks while working at AT&T Bell Laboratories as a technical supervisor of high-end microprocessor design group (1977-1985).
Dr. Sung-Mo "Steve" Kang served as Chancellor of the University of California, Merced, from 2007 to 2011. During his tenure, he has increased student enrollment, improved the national and international visibility of the university, secured financial resources, expanded faculty and staff, and enhanced campus infrastructure.
Before joining UC Merced, Dr. Kang was Dean of Baskin School of Engineering and Professor of Electrical Engineering during 2001-2007 at UC Santa Cruz where he had initiated several interdisciplinary programs in such areas as biomolecular engineering, information systems and technology management, biomimetic microelectronic systems, quantitative biomedical research, and bioinformatics. He also served as President of Silicon Valley Engineering Council, the alliance for engineering leaders in Silicon Valley (2002-2003).
Dr. Sung-Mo "Steve" Kang was Head of the Department of Electrical and Computer Engineering at the University of Illinois at Urbana-Champaign from 1995 to 2000. He is a fellow of the Institute of Electrical and Electronics Engineers (IEEE), the Association for Computing Machinery (ACM), and the American Association for the Advancement of Science (AAAS), and the president of the IEEE Circuits and Systems Society. Dr. Kang was the founding editor-in-chief of the IEEE Transactions on Very Large Scale Systems (1992-1994).
Dr. Sung-Mo "Steve" Kang holds 15 U.S. patents and has written or co-authored nine books and more than 350 technical papers, and won numerous awards, among others, the Silicon Valley Engineering Hall of Fame (2009), ISQED Quality Award by the International Society for Quality Electronic Design (2008), Chang-Lin Tien Education Leadership Award (2007), IEEE Mac Van Valkenburg Award (2005), and Alexander von Humboldt Award for Senior US Scientists (1997). As an entrepreneur, he co-founded a fabless mobile memory chip design company, ZTI, which is currently located in San Jose, the US.
Dr. Kang earned his doctorate from the University of California, Berkeley; a Master of Science degree from the State University of New York at Buffalo, and a Bachelor of Science degree, graduating summa cum laude, from Fairleigh Dickinson University in Teaneck, NJ. All his academic degrees are in electrical engineering.
2013.02.19 View 11130 -
Professor Shin In Shik First in Asia to receive Excellent Dissertation Award from IEEE RTSS
The research team lead by Professor Shin In Shik (Department of Computer Science) received the Excellent Dissertation Awardy in the IEEE RTSS out of 157 dissertations.
It is the first time a Professor under an institute in the Asia region received the Award in the RTSS field during its 33 year history.
Professor Shin had already received an Excellent Dissertation Award as a Ph.D. candidate at the University of Pennsylvania. Thus Professor Shin became the first and only scientist to receive the Award twice.
Professor Shin has successfully defined the scheduling method of the multicore processor which was regarded as the problem in the field of RTSS for the past decade.
Professor Shin has suggested new criteria for sorting real time tasks in parallel thereby suggesting a new scheduling method that surpasses current scheduling methods. The results are anticipated to provide new perspectives in the field of RTSS using multicore processors.
2013.01.22 View 7765
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Professor Lee Jeong Yong Receives 2012 'KAISTian of the Year' Award
Professor Lee Jeong Yong (Department of Material Science and Engineering) received the 2012 ‘KAISTian of the Year’ Award.
Professor Lee had successfully developed a technique that allowed the observation and analysis of liquid in atomic scale.
The technique is expected to have great impact on nano-material synthesis in solution, explaining electrode and electrolyte reaction, liquid and catalysis reaction research, and etc. and was therefore named as the best experimental accomplishment in KAIST in 2012.
Professor Lee and his team’s finding has been published in the April edition of Science magazine and has had attracted the attention of the world. In addition, BBC News, and Science & Environment reported on the findings as their respective top articles.
The optical microscope is incapable of atomic scale observation and the electron microscopes are capable but because of the vacuum state all liquids undergo evaporation making it impossible to observe liquids in an atomic scale.
Professor Lee’s team wrapped the liquid with a layer of grapheme to prevent evaporation and successfully observed real time the platinum growth process in solution.
Professor Lee’s findings were introduced as an example of exemplar research case in the Presidential address for ‘Science Day’ in April.
2013.01.22 View 8452