Engineering
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Two Professors Recognized for the National R&D Excellence 100
< Professor Haeng-Ki Lee (left) and Professor Jeong-Ho Lee (right) >
Two KAIST professors were listed among the 2019 National R&D Excellence 100 announced by the Ministry of Science and ICT and the Korea Institute of S&T Evaluation and Planning.
Professor Haeng-Ki Lee from the Department of Civil and Environmental Engineering was recognized in the field of mechanics and materials for his research on developing new construction materials through the convergence of nano- and biotechnologies.
In the field of life and marine science, Professor Jeong-Ho Lee from the Graduate School of Medical Science and Engineering was lauded for his research of diagnostic tools and therapies for glioblastoma and pediatric brain tumors.
A certificate from the Minister of Ministry of Science and ICT will be conferred to these two professors, and their names will be inscribed on a special 2019 National R&D Excellence 100 plaque to celebrate their achievements. The professors will also be given privileges during the process of new R&D project selection.
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2019.10.15 View 14659 -
Professor Hyun Gyu Park Appointed as Associate Editor for Biosensors and Bioelectronics
Professor Hyun Gyu Park from the Department of Chemical and Biomolecular Engineering was appointed as an associate editor for Biosensors and Bioelectronics, an international journal published by Elsevier.
Biosensors and Bioelectronics is one of the top SCI journals in the fields of chemistry and analytical science (IF 9.518 as of 2018). Professor Park was recognized and appointed as the associate editor for this journal due to his outstanding research achievements in the fields of nucleic acid engineering, biosensors, and nanobiotechnology.
Professor Park will serve as the associate editor from this October until December 2021.
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2019.10.01 View 9285 -
Deep Learning-Powered 'DeepEC' Helps Accurately Understand Enzyme Functions
(Figure: Overall scheme of DeepEC)
A deep learning-powered computational framework, ‘DeepEC,’ will allow the high-quality and high-throughput prediction of enzyme commission numbers, which is essential for the accurate understanding of enzyme functions.
A team of Dr. Jae Yong Ryu, Professor Hyun Uk Kim, and Distinguished Professor Sang Yup Lee at KAIST reported the computational framework powered by deep learning that predicts enzyme commission (EC) numbers with high precision in a high-throughput manner.
DeepEC takes a protein sequence as an input and accurately predicts EC numbers as an output. Enzymes are proteins that catalyze biochemical reactions and EC numbers consisting of four level numbers (i.e., a.b.c.d) indicate biochemical reactions. Thus, the identification of EC numbers is critical for accurately understanding enzyme functions and metabolism.
EC numbers are usually given to a protein sequence encoding an enzyme during a genome annotation procedure. Because of the importance of EC numbers, several EC number prediction tools have been developed, but they have room for further improvement with respect to computation time, precision, coverage, and the total size of the files needed for the EC number prediction.
DeepEC uses three convolutional neural networks (CNNs) as a major engine for the prediction of EC numbers, and also implements homology analysis for EC numbers if the three CNNs do not produce reliable EC numbers for a given protein sequence. DeepEC was developed by using a gold standard dataset covering 1,388,606 protein sequences and 4,669 EC numbers.
In particular, benchmarking studies of DeepEC and five other representative EC number prediction tools showed that DeepEC made the most precise and fastest predictions for EC numbers. DeepEC also required the smallest disk space for implementation, which makes it an ideal third-party software component.
Furthermore, DeepEC was the most sensitive in detecting enzymatic function loss as a result of mutations in domains/binding site residue of protein sequences; in this comparative analysis, all the domains or binding site residue were substituted with L-alanine residue in order to remove the protein function, which is known as the L-alanine scanning method.
This study was published online in the Proceedings of the National Academy of Sciences of the United States of America (PNAS) on June 20, 2019, entitled “Deep learning enables high-quality and high-throughput prediction of enzyme commission numbers.”
“DeepEC can be used as an independent tool and also as a third-party software component in combination with other computational platforms that examine metabolic reactions. DeepEC is freely available online,” said Professor Kim.
Distinguished Professor Lee said, “With DeepEC, it has become possible to process ever-increasing volumes of protein sequence data more efficiently and more accurately.”
This work was supported by the Technology Development Program to Solve Climate Changes on Systems Metabolic Engineering for Biorefineries from the Ministry of Science and ICT through the National Research Foundation of Korea. This work was also funded by the Bio & Medical Technology Development Program of the National Research Foundation of Korea funded by the Korean government, the Ministry of Science and ICT.
Profile:
-Professor Hyun Uk Kim (ehukim@kaist.ac.kr)
https://sites.google.com/view/ehukim
Department of Chemical and Biomolecular Engineering
-Distinguished Professor Sang Yup Lee (leesy@kaist.ac.kr)
Department of Chemical and Biomolecular Engineering
http://mbel.kaist.ac.kr
2019.07.09 View 40598 -
Efficiently Producing Fatty Acids and Biofuels from Glucose
Researchers have presented a new strategy for efficiently producing fatty acids and biofuels that can transform glucose and oleaginous microorganisms into microbial diesel fuel, with one-step direct fermentative production.
The newly developed strain, created by Distinguished Professor Sang Yup Lee and his team, showed the highest efficiency in producing fatty acids and biodiesels ever reported. It will be expected to serve as a new platform to sustainably produce a wide array of fatty acid-based products from glucose and other carbon substrates.
Fossil fuels, which have long been energy resources for our daily lives, are now facing serious challenges: depletion of their reserves and their role in global warming. The production of sustainable bio-based renewable energy has emerged as an essential alternative and many studies to replace fossil fuels are underway. One of the representative examples is biodiesel. Currently, it is mainly being produced through the transesterification of vegetable oils or animal fats.
The research team engineered oleaginous microorganisms, Rhodococcus opacus, to produce fatty acids and their derivatives that can be used as biodiesel from glucose, one of the most abundant and cheap sugars derived from non-edible biomass.
Professor Lee’s team has already engineered Escherichia coli to produce short-chain hydrocarbons, which can be used as gasoline (published in Nature as the cover paper in 2013). However, the production efficiency of the short-chain hydrocarbons using E. coli (0.58 g/L) fell short of the levels required for commercialization.
To overcome these issues, the team employed oil-accumulating Rhodococcus opacus as a host strain in this study. First, the team optimized the cultivation conditions of Rhodococcus opacus to maximize the accumulation of oil (triacylglycerol), which serves as a precursor for the biosynthesis of fatty acids and their derivatives. Then, they systematically analyzed the metabolism of the strain and redesigned it to enable higher levels of fatty acids and two kinds of fatty acid-derived biodiesels (fatty acid ethyl esters and long-chain hydrocarbons) to be produced.
They found that the resulting strains produced 50.2, 21.3, and 5.2 g/L of fatty acids, fatty acid ethyl esters, and long-chain hydrocarbons, respectively. These are all the highest concentrations ever reported by microbial fermentations. It is expected that these strains can contribute to the future industrialization of microbial-based biodiesel production.
“This technology creates fatty acids and biodiesel with high efficiency by utilizing lignocellulose, one of the most abundant resources on the Earth, without depending on fossil fuels and vegetable or animal oils. This will provide new opportunities for oil and petroleum industries, which have long relied on fossil fuels, to turn to sustainable and eco-friendly biotechnologies,” said Professor Lee.
This paper titled “Engineering of an oleaginous bacterium for the production of fatty acids and fuels” was published in Nature Chemical Biology on June 17.
This work was supported by the Technology Development Program to Solve Climate Changes on Systems Metabolic Engineering for Biorefineries from the Ministry of Science and ICT through the National Research Foundation (NRF) of Korea (NRF-2012M1A2A2026556 and NRF-2012M1A2A2026557).
(Figure: Metabolic engineering for the production of free fatty acids (FFAs), fatty acid ethyl esters (FAEEs), and long-chain hydrocarbons (LCHCs) in Rhodococcus opacus PD630. Researchers have presented a new strategy for efficiently producing fatty acids and biofuels that can transform glucose and oleaginous microorganisms into microbial diesel fuel, with one-step direct fermentative production.)
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Source:
Hye Mi Kim, Tong Un Chae, So Young Choi, Won Jun Kim and Sang Yup Lee. Engineering of an oleaginous bacterium for the production of fatty acids and fuels. Nature Chemical Biology ( https://www.nature.com/nchembio/ ) DOI: 10.1038/s41589-019-0295-5
Profile
Dr. Sang Yup Lee
leesy@kaist.ac.kr
Distinguished Professor at the Department of Chemical and Biomolecular Engineering
KAIST
2019.06.19 View 52323 -
Novel Via-Hole-Less Multilevel Metal Interconnection Methods
Forming reliable multi-level metal interconnections is a key technology for integrating devices into organic integrated circuits (ICs). The conventional approach, called “via-hole,” locally removes the insulator and utilizes metal interconnects through the holes. Due to the high sensitivity of organic materials to chemical solvents, heat, and photo-radiation used in conventional “via-hole” methods, alternative printing methods or laser drilling methods have been developed. However, finding a reliable and practical metal interconnection for organic ICs is still challenging.
The research team of KAIST Professor Sung Gap Im and Postech Professor Kim Jae-Joon reported a new interconnection method that does not require via-hole formation, “via-hole-less metal interconnection,” in Nature Communications on June 3.
Metal electrodes in different layers can be isolated from each other by patterned dielectric layers, where they then can be interconnected to others in the open area where the dielectric layer is not present. See the images below. Vapor phase deposition and in-situ patterning of dielectric layer using iCVD (initiated chemical vapor deposition), used in the “via-hole-less” method, ensure a damage-free process for organic semiconductor materials and result in outstanding performance of the organic devices as multilevel metal interconnects are reliably formed. The team successfully demonstrated three-dimensional (3D) stacking of five organic transistors and integrated circuits using the proposed via-hole-less interconnect method. See the image below.
Vapor phase deposition and in-situ patterning of dielectric layer using iCVD (initiated chemical vapor deposition), used in the “via-hole-less” method, ensure a damage-free process for organic semiconductor materials and result in outstanding performance of the organic devices as multilevel metal interconnects are reliably formed. The team successfully demonstrated three-dimensional (3D) stacking of five organic transistors and integrated circuits using the proposed via-hole-less interconnect method. See the image below.
Professor Kim explained, “Our proposed via-hole-less interconnect method using a selectively patterned dielectric overcomes the limitations of the previous time-consuming, one-by-one via-hole formation process and provides reliable methods for creating metal interconnects in organic ICs. We expect the via-hole-less scheme to bring advances to organic IC technology.”
2019.06.18 View 45878 -
Engineered Microbial Production of Grape Flavoring
(Image 1: Engineered bacteria that produce grape flavoring.)
Researchers report a microbial method for producing an artificial grape flavor. Methyl anthranilate (MANT) is a common grape flavoring and odorant compound currently produced through a petroleum-based process that uses large volumes of toxic acid catalysts.
Professor Sang-Yup Lee’s team at the Department of Chemical and Biomolecular Engineering demonstrated production of MANT, a naturally occurring compound, via engineered bacteria. The authors engineered strains of Escherichia coli and Corynebacetrium glutamicum to produce MANT through a plant-based engineered metabolic pathway.
The authors tuned the bacterial metabolic pathway by optimizing the levels of AAMT1, the key enzyme in the process. To maximize production of MANT, the authors tested six strategies, including increasing the supply of a precursor compound and enhancing the availability of a co-substrate. The most productive strategy proved to be a two-phase extractive culture, in which MANT was extracted into a solvent. This strategy produced MANT on the scale of 4.47 to 5.74 grams per liter, a significant amount, considering that engineered microbes produce most natural products at a scale of milligrams or micrograms per liter.
According to the authors, the results suggest that MANT and other related molecules produced through industrial processes can be produced at scale by engineered microbes in a manner that would allow them to be marketed as natural one, instead of artificial one.
This study, featured at the Proceeding of the National Academy of Sciences of the USA on May 13, was supported by the Technology Development Program to Solve Climate Changes on Systems Metabolic Engineering for Biorefineries from the Ministry of Science and ICT.
(Image 2. Overview of the strategies applied for the microbial production of grape flavoring.)
2019.05.15 View 58184 -
Professor Park at UPC-Barcelona Tech Receives Jeong Hun Cho Award
Professor Hyuk Park was honored to be the recipient of the Jeong Hun Cho Award which was presented at the Universitat Politècnica de Catalunya Barcelona Tech. The award recognizes young scientists in the field of aerospace engineering.
Professor Park, a graduate of KAIST’s Department of Mechanical Engineering in 2001, earned his MS and PhD at the Gwangju Institute of Science and Technology, and works at the Castelldefels School of Telecommunications and Aerospace Engineering at UPC-Barcelona Tech. He won this year’s award, which honors former PhD candidate Jeong Hun Cho at the Aerospace Engineering Department who died in a lab accident in 2003. Professor Park also received 25 million KRW prize money. Cho’s family endowed the award and scholarship in his memory. Since 2005, the scholarship has selected three young scholars every year who specialize in aerospace engineering from Cho’s alma maters of KAIST, Korea University, and Kongju National University High School.
Professor Park was selected as this year’s awardee in recognition of his studies of synthetic-aperture radar (SAR) satellite radiometer system, remote sensing radio frequency interference reduction system development, and 3CAT series research.
The Award Committee also chose three students for scholarships: PhD candidate Sang-Woo Chung from the Department of Aerospace Engineering at KAIST with 4 million KRW, PhD candidate Eun-Hee Kang from the School of Mechanical Engineering at Korea University with 4 million KRW, and Chan-Ho Song from Kongju National University High School with 3 million KRW.
2019.05.14 View 9729 -
Distinguished Professor Sang Yup Lee Honored with the 23rd NAEK Award
(Distinguished Professor Sang Yup Lee from the Department of Chemical and Biomolecular Engineering)
Distinguished Professor Sang Yup Lee from the Department of Chemical and Biomolecular Engineering was honored to be the laureate of the 23rd NAEK Award.
The NAEK (National Academy of Engineering of Korea) Award was instituted in 1997 to honor and recognize engineers who have made significant contributions to the development of the engineering and technology field at universities, industries, and institutions. Every year, it is conferred to only one person who has achieved original and world-leading research that has led to national development.
Distinguished Professor Lee is a pioneering scholar of the field of systems metabolic engineering and he was recognized for his significant achievements in the biochemical industry by developing novel microbial bioprocesses. In particular, he is globally renowned for biological plastic synthesis, making or decomposing polymers with microorganisms instead of using fossil resources.
He has produced numerous high-quality research breakthroughs in metabolic and systems engineering. In 2016, he produced an easily degradable plastic with Escherichia coli (E. coli). In 2018, he successfully produced aromatic polyesters, the main material for PET (poly ethylene terephthalate) from E. coli strains. He also identified microorganism structures for PET degradation and improved its degradability with a novel variant.
His research was ranked number one in the research and development division of Top Ten Science and Technology News 2018 announced by Korean Federation of Science & Technology Societies. He is one of highly cited researchers (HCR) ranked in the top 1% by citations for their field by the Clarivate Analytics.
2019.03.21 View 10294 -
The Future Mobility of the Year 2019
KAIST announced the Future Mobility of the Year (FMOTY) 2019. The winners are Volvo 360C, Toyota e-Palette, and Toyota Concept-i WALK.
FMOTY are the first awards that recognizes concept cars that exhibit innovative services and practical transportation technology in three categories: private mobility, public and commercial mobility, and personal mobility.
Figure 1. The winner in the private mobility division, the Volvo 360C
In the private mobility division, the award went to the Volvo 360C. With targeted routes of roughly 186 miles, this vehicle has an ambitious service goal to replace airplanes by traveling these routes with great comfort. Goro Okazaki, a journalist with Car and Driver Japan, said, “The Volvo 360C clearly shows how highly personalized autonomous driving can change the future.”
Figure 2. The winner in the public mobility division, the Toyota e-Palette
The Toyota e-Palette was the winning car in commercial mobility division. This vehicle provides the best solution as a mobile service platform by transforming itself into mobile hospitals, hotels, stores and food trucks. Carlo Calderón, a journalist for Autopista Spain, said, “It has a great strength in remodeling its indoor and outdoor spaces according to various commercial uses.”
Figure 3. The winner in the personal mobility division, the Toyota Concept-i WALK
In the personal mobility division, the award went to the Toyota Concept-i WALK. It was recognized for having an exquisite user environment and artificial intelligent agent, along with an excellent completion. Jun Miao, a journalist with MJ CarShow China, said, “It is aesthetically pleasing. Beyond the upright control of conventional personal mobility, it allows agile control with a joystick.”
FMOTY conducted a screening process for 45 concept cars over three months and 16 renowned automotive experts from 11 countries participated as judges for this award, including Editor in Chief of BBC Top Gear Magazine Charlie Turner and European Bureau Chief of Automobile Magazine Georg Kacher. The judges said that FMOTY was born to propose a new aspect of future mobility, and in terms of evaluating technical and social values of concept cars, FMOTY carries great significance.
Kyung-soo Kim, Dean of the Cho Chun Shik Graduate School of Green Transportation said, “Globally renowned experts in the automotive field participated as judges to elevate the prestige and fairness of the awards. KAIST members were excluded from the entire judging process. I believe that the FMOTY Awards will expand public attention from the present to the future.”
Details can be found on the official website of FMOTY ( www.fmoty.org ).
2019.03.11 View 8569 -
The First Award for Concept Cars, Future Mobility of the Year
KAIST will host an award to recognize the most visionary and inspiring concept cars of the year.
The ‘Future Mobility of the Year (FMOTY)’ Awards recognize concept cars that have made outstanding contributions to future mobility. The first awards ceremony will take place in Korea in March 2019.
The awards will be given to concept cars that exhibit innovative services and practical transportation technology in three categories: private mobility, public and commercial mobility, and personal mobility.
To ensure a fair judging process, the contest invited influential and eminent journalists in the automotive field. They will evaluate the social values and innovative contributions of the concept cars that will pave the way for next-generation transportation.
Concept cars have been neglected in existing automobile awards, such as the ‘Car of the Year’ because they have been considered experimental prototypes only built for showcasing a new vision for the quite far future.
The FMOTY Awards will brings concept cars back into the spotlight and showcase the best ideas and social values of mind-blowing concept cars.
Among 45 concept cars, fifteen candidates were selected as finalists after the initial screening that took place over the last three months: including models from Audi, BMW, Mercedes-Benz, Peugeot, Porsche, Renault, Toyota, Volkswagen, and Volvo. The winners will be announced and awarded in Seoul on March 28th.
Kyung-soo Kim, Dean of the Cho Chun Shik Graduate School of Green Transportation which organizes the award said, “As the automobile industry undergoes an era of transformation, it is crucial to recognize the efforts of automobile companies who are making attempts to create novel forms of mobility. That is why we launched the FMOTY Awards, hoping to add a future-oriented spirit to the existing awards that consider finished vehicles only. By selecting the best concept car, the FMOTY Awards will expand public attention from the present to the future.”
Details can be found on the official website of FMOTY ( www.fmoty.org), where photos of the finalists are also available for download ( http://bitly.kr/JTUUp).
Figure 1. Finalists for the 'Future Mobility of the Year'
2019.02.13 View 9081 -
First Korean Member of OceanObs' Organizing Committee
Professor Sung Yong Kim from the Department of Mechanical Engineering became the first Korean to be elected as an organizing committee member of the international conference OceanObs’19’, specializing in the ocean observing field.
Professor Kim has been actively engaged in advisory panels, technical committees, and working groups for the North Pacific Marine Science Organization (PICES). Through numerous activities, he was recognized for his professionalism and academic achievements, which led him to be appointed as a member of the organizing committee.
The organizing committee is comprised of leading scholars and researchers from 20 countries, and Professor Kim will be the first Korean scientist to participate on the committee.
Since 1999, the conference has been held every decade. Global experts specializing in oceanic observation gather to discuss research directions for the next ten years by monitoring physical, biological, and chemical variables in regional, national, and global oceans and applying marine engineering.
This year, approximately 20 institutes including NASA’s Jet Propulsion Laboratory (JPL), the National Science Foundation, the National Oceanic and Atmospheric Administration, and the European Space Agency will support funds as well as high-tech equipment to the conference.
This year’s conference theme is the governance of global ocean observing systems such as underwater gliders, unmanned vehicles, remote sensing, and observatories. The conference will hold discussions on monitoring technology and information systems to ensure human safety as well as to develop and preserve food resources. Additionally, participants will explore ways to expand observational infrastructures and carry out multidisciplinary approaches.
There will also be collaborations with the Global Ocean Observing System (GOOS) and the Partnership for Observation of the Global Oceans (POGO) to organize ocean observing programs and discuss priorities.
Finally, they will set a long-term plan for solving major scientific issues, such as climate change, ocean acidification, energy, and marine pollution.
Professor Kim said, “Based on the outcomes drawn from the conference, I will carry out research on natural disasters and climate change monitoring by using unmanned observing systems. I will also encourage more multidisciplinary research in this field.”
2019.01.25 View 13865 -
KAIST Seals the Deal for Kenya KAIST Project
KAIST will participate in Kenya’s strategic economic development plan under the provision of a turnkey-based science and technology education consultancy for the establishment of the Kenya Advanced Institute of Science and Technology (Kenya KAIST).KAIST signed the contract on November 30 with the Konza Technopolis Development Authority to establish Kenya KAIST. Korea Eximbank will offer a 95 million USD loan to the Kenyan government for this project. The project will include the educational and architectural design and construction of Kenya KAIST. The campus will be constructed in the Konza Techno City nearby Nairobi by 2021, with the first batch of 200 graduate students starting classes in 2022. KAIST, in consortium with Samwoo and Sunjin architecture and engineering companies, will take the lead of the three-year project, with the kick-off ceremony planned at the end of next January in Nairobi. The Kenyan government plans to transform Kenya into a middle-income country under Vision 2030 through promoting science, technology, and innovation for national economic growth. Nicknamed Africa’s Silicon Savannah, Konza Techno City is a strategic science and technology hub to realize this vision. To this end, the medium-term plan set a goal to provide specialized research and training in various leading-edge engineering and advanced science fields.In the two-phase evaluation of the consultancy bidding, KAIST won preferred bidder status in the technical proposal evaluation, outbidding three other Korean consortia. Invited to the financial proposal bidding, the KAIST consortium successfully completed month-long contract negotiations with Kenya last week.KAIST will develop academic curricula for six initial departments (Mechanical Engineering, Electrical/Electronic Engineering, ICT Engineering, Chemical Engineering, Civil Engineering, and Agricultural Biotechnology), which will lay the ground work for engineering research and education in Kenya to meet emerging socioeconomic demands. In addition, KAIST will provide the education of basic sciences of math, physics, chemistry, and biology for students.It is also notable that the Kenyan government asked to develop an industry-academy cooperation program in Konza Techno City. It reflects the growing industrial needs of Kenya KAIST, which will be located in the center of the Konza Technopolis. It is anticipated that the technopolis will create 16,675 jobs in the medium term and over 200,000 after completion, positioning Kenya as an ICT hub within the region.KAIST also shares a similar history of establishment with Kenya KAIST, as it will be built with a foreign loan. KAIST, created by the Korean government in 1971 to drive the economic engine through advancement of science and technology with a six-million USD loan from USAID, has now become a donor institution that hands down science and technology education systems including the construction of campuses to underdeveloped countries.The successful case of KAIST has been benchmarked by many countries for years. For instance, KAIST set up the curriculum of the nuclear engineering program at the Khalifa University of Science and Technology in UAE in 2010. In China, Chongqing University of Technology is running its electrical engineering and computer science programs based on the educational systems and curricula offered by KAIST from 2015. In October, KAIST also signed an MOU with the Prince Mohammad Bin Salman College of Cyber Security, AI, and Advanced Technologies in Saudi Arabia to provide the undergraduate program for robotics.Among all these programs benchmarking KAIST, Kenya KAIST clearly stands out, for it is carrying out a turnkey-based project that encompasses every aspect of institution building ranging from educational curriculum development to campus construction and supervision.President Sung-Chul Shin is extremely excited about finalizing the deal, remarking, “It is of great significance that KAIST’s successful development model has carved out a unique path to becoming a global leading university that will benefit other countries. In only a half century, we have transitioned from a receiver to a donor institution, as the country itself has done.”“KAIST will spare no effort for Kenya KAIST to become a successful science and technology university that will play a crucial role in Kenya’s national development. I believe Kenya KAIST will be an exemplary case of an ODA (Official Development Assistance) project based on the development of science and technology to benefit underdeveloped countries,” he added.
2018.12.03 View 11667