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Systems biology demystifies the resistance mechanism of targeted cancer medication
Korean researchers have found the fundamental resistance mechanism of the MEK inhibitor, a recently highlighted chemotherapy method, laying the foundation for future research on overcoming cancer drug resistance and improving cancer survival rates. This research is meaningful because it was conducted through systems biology, a fusion of IT and biotechnology.
The research was conducted by Professor Gwang hyun Cho’s team from the Department of Biology at KAIST and was supported by the Ministry of Education, Science and Technology and the National Research Foundation of Korea.
The research was published as the cover paper for the June edition of the Journal of Molecular Cell Biology (Title: The cross regulation between ERK and PI3K signaling pathways determines the tumoricidal efficacy of MEK inhibitor).
Targeted anticancer medication targets certain molecules in the signaling pathway of the tumor cell and not only has fewer side effects than pre-existing anticancer medication, but also has high clinical efficacy. The technology also allows the creation of personalized medication and has been widely praised by scientists worldwide.
However, resistances to the targeted medication have often been found before or during the clinical stage, eventually causing the medications to fail to reach the drug development stage. Moreover, even if the drug is effective, the survival rate is low and the redevelopment rate is high.
An active pathway in most tumor cells is the ERK (Extracellular signal-regulated kinases) signaling pathway. This pathway is especially important in the development of skin cancer or thyroid cancer, which are developed by the mutation of the BRAF gene inside the path. In these cases, the MEK (Extracellular signal-regulated kinases) inhibitor is an effective treatment because it targets the pathway itself. However, the built-up resistance to the inhibitor commonly leads to the redevelopment of cancer.
Professor Cho’s research team used large scale computer simulations to analyze the fundamental resistance mechanism of the MEK inhibitor and used molecular cell biological experiments as well as bio-imaging* techniques to verify the results.
* Bio-imaging: Checking biological phenomena at the cellular and molecular levels using imagery
The research team used different mutational variables, which revealed that the use of the MEK inhibitor reduced the transmission of the ERK signal but led to the activation of another signaling pathway (the PI3K signaling pathway), reducing the effectiveness of the medication. Professor Cho’s team also found that this response originated from the complex interaction between the signaling matter as well as the feedback network structure, suggesting that the mix of the MEK inhibitor with other drugs could improve the effects of the targeted anticancer medication.
Professor Cho stated that this research was the first of its kind to examine the drug resistivity against the MEK inhibitor at the systematic dimension and showed how the effects of drugs on the signaling pathways of cells could be predicted using computer simulation. It also showed how basic research on signaling networks can be applied to clinical drug use, successfully suggesting a new research platform on overcoming resistance to targeting medication using its fundamental mechanism.
2012.07.06 View 10487 -
New wireless charging device developed
The On-line Electric Vehicle (OLEV) developed by KAIST has made a step towards commercialization with the development of a more economic wireless charging device.
Professor Chun-Taek Rim from the Department of Nuclear and Quantum Engineering at KAIST has developed a new I-shaped wireless charging device that differs from the pre-existing rail-type electricity feeder. This device can be modularly produced and requires relatively less construction, significantly reducing the cost of implementation.
The KAIST OLEV is a new concept electric car that has a special electricity collecting device underneath it. The car’s battery is charged by magnetic fields produced from electric lines buried 15cm underneath the road. The vehicle was first tested in 2009, making it the first wireless electric car in the world. OLEV can be charged during stoppage time between traffic lights and receives real-time power when running. OLEV is currently in operation at the KAIST Munji Campus in Daejeon and is also being exhibited at the Yeosu Expo and Seoul Grand Park.
The device itself has a charging capacity of 15kW, and the electricity is supplied through an electricity feeder with a width of 80cm with a space interval of 20cm. Despite being hailed as a technological breakthrough and revolutionary concept, KAIST OLEV has been criticized for problems in commercialization, due to the difficulties in installing wires beneath existing roads, which costs a considerable amount of money.
The new I-shaped wireless charging device reduces the width of the electricity feeder by 10cm, a mere one-eighth of the size of the previous version, and greatly increases the charging power to 25kW. Furthermore, the left and right permissible space of automobiles has increased to 24cm and the magnetic field complies with the international design guidelines, making the OLEV safe for the human body.
The reduction of the width has made the mass production of modules possible, making the installation of KAIST OLEV more economical and marketable. Professor Rim emphasized that compared with the existing rail-type electricity feeder, the new technology will need only one-tenth of the construction time and 80% of the cost, significantly improving OLEV’s constructability and workability.
The research was published in the IEEE Transactions on Power Electronics last December, and Professor Rim was invited to talk at the Conference on Electric Roads & Vehicles, which was held in February in the United States, about the new technology.
2012.07.06 View 10790
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The hereditary factor of autism revealed
Korean researchers have successfully investigated the causes and hereditary factors for autistic behavior and proposed a new treatment method with fewer side effects.
This research was jointly supported by the Ministry of Education, Science and Technology and the National Research Foundation as part of the Leading Researcher and Science Research Center Program
The research findings were publishing in the June edition of Nature magazine and will also be introduced in the July edition of Nature Reviews Drug Discovery, under the title ‘Autistic-like social behavior in Shank2-mutant mice improved by restoring NMDA receptor function’.
The research team found that lack of Shank2 genes in mice, which are responsible for the production of synapse proteins, caused autistic-like behavior. The results strongly suggested that the Shank2 gene was linked to autistic behavior and that Shank2 deficiency induced autistic behaviors.
Autism is a neural development disorder characterized by impaired social interaction, repetitive behavior, mental retardation, anxiety and hyperactivity. Around 100 million people worldwide display symptoms of autistic behavior. Recent studies conducted by the University of Washington revealed that 1 out of 3 young adults who display autistic behavior do not fit into the workplace or get accepted to college, a much higher rate than any other disorder. However, an effective cure has not yet been developed and current treatments are limited to reducing repetitive behavior.
The research team confirmed autistic-like social behavior in mice without the Shank2 genes and that the mice had decreased levels of neurotransmission in the NMDA receptor. The mice also showed damaged synaptic plasticity* in the hippocampus**.
* Plasticity: ability of the connectionbetween two neurons to change in strength in response to transmission of information
**Hippocampus: part of the brain responsible for short-term and long-term memory as well as spatial navigation.
The research team also found out that, to restore the function of the NMDA receptor, the passive stimulation of certain receptors, such as the mGLuR5, yielded better treatment results than the direct stimulation of the NMDA. This greatly reduces the side effects associated with the direct stimulation of receptors, resulting in a more effective treatment method.
This research successfully investigated the function of the Shank2 gene in the nerve tissue and showed how the reduced function of the NMDA receptor, due to the lack of the gene, resulted in autistic behavior. It also provided new possibilities for the treatment of autistic behavior and impaired social interaction
2012.06.24 View 10815
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Flexible Nanogenerator Technology
KAIST research team successfully developed the foundation technology that will enable to fabrication of low cost, large area nanogenerator.
Professor Lee Gun Jae’s team (Department of Materials Science and Engineering) published a dissertation on a nanogenerator using nanocomplexes as the cover dissertation of the June edition of Advanced Materials.
The developed technology is receiving rave reviews for having overcome the complex and size limitations of the nanogenerator fabrication process.
A nanogenerator is an electricity generator that uses materials in the nanoscale and uses piezoelectricity that creates electricity with the application of physical force.
The generation technology using piezoelectricity was appointed as one of top 10 promising technologies by MIT in 2009 and was included in the 45 innovative technologies that will shake the world by Popular Science Magazine in 2010.
The only nanogenerator thus far was the ZnO model suggested by Georgia Tech’s Professor Zhong Lin Wang in 2005.
Professor Lee’s team used ceramic thin film material BaTiO3 which has 15~20 times greater piezoelectric capacity than ZnO and thus improved the overall performance of the device. The use of a nanocomplex allows large scale production and the simplification of the fabrication process itself.
The team created a mixture of PDMS (polydimethylsiloxane) with BaTiO3 and either of CNT (Carbon Nanotube) or RGO (Reduced Graphene Oxide) which has high electrical conductivity and applied this mixture to create a large scale nanogenerator.
2012.06.18 View 12445
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ICISTS-KAIST: Korea's Largest Scale University Student International Conference
An entirely student led and planned international conference will be held at KAIST.
KAIST student club ICISTS will be holding the ‘ICISTS-KAIST 2012’ conference from the 6th of August till the 10th of August.
This is the 8th annual conference which started in 2005 which is planned and executed entirely by undergraduate students. The conference aims at examining the rapidly changing relationship between science and technology and society and actively debate on the matter.
The 1st conference involved only 150 students of which only a few from abroad. However last year’s conference involved 300 students from 22 nations from all over the world.
The keyword of the conference in the much talked about ‘integration’ and therefore aims at establishing interdisciplinary networks that go beyond background and borders.
Not only does ‘ICISTS-KAIST’ involves panel talks by speakers, but also offers small scale lectures simultaneously which allows participants to attend talks that suit their individual preferences.
Group discussion session between participants and speakers will be held along with various performances and booths to introduce Korean traditional culture to international participants.
The theme of this year’s conference is “Age of Integration: Beyond the Borders of Knowledge”. It is comprised of 3 smaller conferences with themes of Art and Science, Natural Sciences and Social Sciences, and Science and Technology and Human Society.
This year’s conference will host lectures by Professor S. Shyam Sundar of Pennsylvania State Communication University, Professor Bruce E. Seely Dean of Michigan School of Engineering, and Professor Shin Hui Seop who was named as the ‘1st National Scientist’ in 2005.
Registration ends on the 15th of July and more information can be found at www.icists.org.
2012.06.18 View 8036
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President Nam Pyo Suh receives Honorary Doctorate from Bilkent University, Turkey
President of KAIST Nam Pyo Suh received an Honorary Doctorate from Turkey’s Bilkent University on June 13th, 2012.
Bilkent University revealed that it is President Suh’s invention of a plastic manufacture process used all over the world and the combination of academic achievements like the creation of the axiomatic design theory that merits the Honorary Doctorate.
After the presentation ceremony, President Suh gave a lecture to professors and students at Bilkent University on the "University of the Future: Changing Education Paradigm."
Bilkent University is located in Ankara, the capital of Turkey and was established in 1984, which is largely regarded as Turkey’s best private university. It ranked 32 out of 50 universities in Times Higher Educations’ 100 Under 50 List of World’s Best New Universities.
2012.06.18 View 8397 -
High Capacity Molecular Storage Technology Developed by KAIST Professor Omar M. Yaghi
KAIST research team has succeeded in developing the technology that allows high capacity protein storage.
Professor Omar M. Yaghi (Graduate School of EEWS) and his research team succeeded in developing the core technology that enables the storage of various types of proteins by developing a metal organic structure. The result of their research was published in the May edition of Science magazine.
The newly developed technology can store various types and sizes of proteins. This property is expected to pave way to: 1) development of high capacity, high integration drugs 2) development of virus separation compounds 3) selective removal of protein causing negative reactions in the body 4) permanent preservation of rare polymeric proteins, among other expectations.
In addition it becomes possible to selectively remove and preserve all the body’s cells including stem cells which will aid the development of cures for incurable diseases and increase life expectancy and medical technology in general.
Conventional metal-organic structure used 7 Angstrom large small single molecules and therefore could not be used in the storage of large molecules or proteins. Its usability was proven only as potential high capacity gas storage structure. In addition the internal structure of the metal organic structure is cross linked which made it even more difficult to store large proteins within the structure.
Professor Yaghi’s team used molecular structure over 5nm in length in the development of the metal-organic structure to solve the problem associated with size of structure. The ordered structure of the structure’s pore was observed for the first time using Transmission Electron Microscope.
The new structure enables the ordered storage of large proteins and was able to store vitamin and proteins like myoglobin at high capacity for the first time in the world.
2012.05.30 View 8305
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Successful Development of Excavation System of Biomarkers containing Protein Decomposition Control Enzyme Information
A Korean team of researchers successfully developed a biomarker excavation system named E3Net that excavates biomarkers containing information of the enzymes that control the decomposition of proteins. The development of the system paved the possibility of development of new high quality biomarkers.
*Biomarker: Molecular information of unique patterns derived from genes and proteins that allow the monitoring of physical changes from genetic or environmental causes.
Professor Lee Kwan Soo’s team (Department of Biological Sciences) composed of Doctorate candidate Han Young Woong, Lee Ho Dong Ph.D. and Professor Park Jong Chul published a dissertation in the April edition of Molecular and Cellular Proteomics. (Dissertation Title: A system for exploring E3-mediated regulatory networks of cellular functions).
Professor Lee’s team compiled all available information of the enzyme that controls protein decomposition (E3 enzyme) and successfully compiled the inter-substrate network by extracting information from 20,000 biology related data base dissertations. The result was the development of the E3Net system that analyzes the related cell function and disease.
Cells have a system that produces, destroys, and recycles proteins in response to the ever changing environmental conditions. Error in these processes leads to disease.
Therefore finding the relationship between E3 enzymes that control the decomposition of proteins and the substrates will allow disease curing and prevention to become much easier. E3 enzyme is responsible for 80% of the protein decomposition and is therefore predicted to be related to various diseases.
However the information on E3 enzyme and inter-substrate behavior are spread out among numerous dissertations and data bases which prevented methodological analysis of the role of the related cells and characteristics of the disease itself.
Professor Lee’s team was successful in creating the E3Net that compiled 2,201 pieces of E3 substrate information, 4,896 pieces of substrate information, and 1,671 pieces of inter-substrate relationship information. This compilation allows for the systematic analysis of cells and diseases.
The newly created network is 10 times larger than the existing network and is the first case where it is possible to accurately find the cell function and related diseases.
It is anticipated that the use of the E3Net will allow the excavation of new biomarkers for the development of personalized drug systems.
The research team applied the E3Net to find tens of new candidate biomarkers related to the major modern diseases like diabetes and cancer.
2012.05.30 View 11758
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Production of chemicals without petroleum
Systems metabolic engineering of microorganisms allows efficient production of natural and non-natural chemicals from renewable non-food biomass
In our everyday life, we use gasoline, diesel, plastics, rubbers, and numerous chemicals that are derived from fossil oil through petrochemical refinery processes. However, this is not sustainable due to the limited nature of fossil resources. Furthermore, our world is facing problems associated with climate change and other environmental problems due to the increasing use of fossil resources. One solution to address above problems is the use of renewable non-food biomass for the production of chemicals, fuels and materials through biorefineries. Microorganisms are used as biocatalysts for converting biomass to the products of interest. However, when microorganisms are isolated from nature, their efficiencies of producing our desired chemicals and materials are rather low. Metabolic engineering is thus performed to improve cellular characteristics to desired levels. Over the last decade, much advances have been made in systems biology that allows system-wide characterization of cellular networks, both qualitatively and quantitatively, followed by whole-cell level engineering based on these findings. Furthermore, rapid advances in synthetic biology allow design and synthesis of fine controlled metabolic and gene regulatory circuits. The strategies and methods of systems biology and synthetic biology are rapidly integrated with metabolic engineering, thus resulting in "systems metabolic engineering".
In the paper published online in Nature Chemical Biology on May 17, Professor Sang Yup Lee and his colleagues at the Department of Chemical and Biomolecular Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Korea present new general strategies of systems metabolic engineering for developing microorganisms for the production of natural and non-natural chemicals from renewable biomass. They first classified the chemicals to be produced into four categories based on whether they have thus far been identified to exist in nature (natural vs. nonnatural) and whether they can be produced by inherent pathways of microorganisms (inherent, noninherent, or created): natural-inherent, natural-noninherent, non-natural-noninherent, and non-natural-created ones. General strategies for systems metabolic engineering of microorganisms for the production of these chemicals using various tools and methods based on omics, genome-scale metabolic modeling and simulation, evolutionary engineering, synthetic biology are suggested with relevant examples. For the production of non-natural chemicals, strategies for the construction of synthetic metabolic pathways are also suggested. Having collected diverse tools and methods for systems metabolic engineering, authors also suggest how to use them and their possible limitations.
Professor Sang Yup Lee said "It is expected that increasing number of chemicals and materials will be produced through biorefineries. We are now equipped with new strategies for developing microbial strains that can produce our desired products at very high efficiencies, thus allowing cost competitiveness to those produced by petrochemical refineries."
Editor of Nature Chemical Biology, Dr. Catherine Goodman, said "It is exciting to see how quickly science is progressing in this field – ideas that used to be science fiction are taking shape in research labs and biorefineries. The article by Professor Lee and his colleagues not only highlights the most advanced techniques and strategies available, but offers critical advice to progress the field as a whole."
The works of Professor Lee have been supported by the Advanced Biomass Center and Intelligent Synthetic Biology Center of Global Frontier Program from the Korean Ministry of Education, Science and Technology through National Research Foundation.
Contact: Dr. Sang Yup Lee, Distinguished Professor and Dean, KAIST, Daejeon, Korea (leesy@kaist.ac.kr, +82-42-350-3930)
2012.05.23 View 11719
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KAIST College of Business ranks no.1 in Asia for executive education
KAIST College of Business ranked 28th in the world and 1st in Asia in the UK Financial Times (FT) 2012 Executive Education open ranking, making it the only school in Korea to be included.
The FT ranking selects the world’s top 65 business graduate schools based on executive education course design, teaching methods & materials, faculty, new skills & learning, quality of participants, and several other criteria. Last year, the KAIST executive education program ranked 29th in the world and 2nd in Asia. This year, it surpassed China’s CEIBS to rank 1st in Asia and has now been included in the ranking for three consecutive years.
Looking at the individual criteria, KAIST ranked highly in course preparation (11th), international location (11th), facilities (12th), and follow-up (5th) and saw increases in aims achieved (31st) and course design (29th).
KAIST attributed its success to the differentiation and specialization of education courses based on position, industry, and enterprise. KAIST College of Business operates an integrative course that fuses business management with science & technology, information media, medicine and innovation. The school runs both a chief and junior executive program to cater to different positional needs and provides specialized lectures that consider a company’s industry and size.
The ‘international location’ criteria saw a huge leap from 23rd to 11th due to the use of both long term and short term overseas exchange programs. The ‘Global Leader’ course created in 2011 is taught only in English and allows students to study abroad in a partner school in the second semester. The college’s knowhow in the MBA program also achieved recognition with high rankings in new skills & learning (18th) as well as in teaching methods & materials (24th).
College of Business President Lee Byung Tae said that the school’s success was achieved through a specialized curriculum that considers the market and explained that the ranking reflects the school’s competitiveness. He also said that KAIST will continue to provide the best educational services appropriate for KAIST’s outstanding reputation.
In the overall ranking, Swiss IMD was ranked number 1, followed by the Harvard Business School. In Asia, China’s CEIBS (29th), Singapore’s Aalto University (42nd), and the National University of Singapore Business School (64th) followed suit.
2012.05.17 View 9132
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KAIST hosts the first Can Satellite (Cansat) competition
Figure: The cansat is sent up into the air using a balloon and then separated at a certain height. The cansat slowly descends and sends terrestrial observation or atmospheric information back to earth.
KAIST will host the first ever Cansat Competition Korea, in which students from different age groups can participate in building and testing the performance of their custom satellites.
The Satellite Technology Research Center (SaTReC) at KAIST announced that it will take applications for the Cansat Competition Korea until May 25th. A cansat is a can-sized educational satellite that contains the basic elements of a real satellite. It is fired up to a few hundred meters in the air using balloons or small rockets and then separated like a real satellite, collecting data and sending the information back to earth. Cansat competitions are regularly held in the United States or Europe, where they have advanced space development programs, but this is the first time this competition will be held in Korea.
The competition caters to different age groups through a cansat experience science camp for elementary and middle school students and a cansat competition for high school and college students.
The science camp will be held from August 7th to 9th at KAIST and Sejong City and will include satellite education, visits to space development centers (KAIST Satellite Technology Research Center and the Korea Aerospace Research Institute), hand-on experience with basic cansat kits, and other various programs.
The science camp will consist of a maximum of 20 teams comprised of students from fifth to ninth grade. Each team will have an advisory teacher and 3 to 4 students and can apply for the competition at no cost.
The cansat competition will test high school and college students on their personally designed and built can satellites along with the creativity of their mission and developmental outcome.
The preliminary review will choose a maximum of 15 teams, while the secondary review will select the 5 teams that will make the final competition based on their design presentation. On August 9th, these 5 teams will be evaluated on their technical ability, mission capacity and presentation skills. The winning team will be given the KAIST presidential award along with a trophy and prize money.
Doctor Park from KAIST SaTReC explained that countries with advanced space technology actively support cansat competitions to expand the base of the field. He emphasized Korea’s need for regular cansat competitions to actively promote potential space researchers.
More information on the competition can be found on the homepage (http://cansat.kaist.ac.kr) or at the KAIST SaTReC (042-350-8613~4)
2012.05.14 View 11435 -
Korea's First MOU between a University Education Volunteer Work Group and Local Government
- 200 Adolescents from Yuseong-gu to Receive Education Community Services
Midam Scholarship committee which is composed of KAIST"s students and graduates, will draw up a contract that states that it will work together with the Yuseong-gu municipality for the development of the district education services on the 14th at the Yuseong-gu office.
Both sides will together ▲mentor the local students, ▲cooperate to run and develop creative programs, ▲exchange work for the development of the KAIST Midam Scholarship Committee, ▲conduct various other projects.
From now, the Midam Scholarship Committee will teach about 200 students in Yuseong-gu. The drawing of this contract has much meaning in that it is the first of its kind.
The Midam Scholarship Committee was founded on 2009 by students in KAIST to teach math, english, and science to students from families with low income levels.
This committee has made educational pacts with middle and high schools located in Daejeong such as Chungnam High School and Beobdong High School, and has not only taught these students but also has given scholarships to the selected students.
On one hand, the Midam Scholarship Committee has also supported 10 students in KAIST who were in need with 300000won each on the 6th. This fund was raised through the donations of alumni and mentoring projects.
The Midam Scholarship Committee has been recognized for its positive impacts on the society and has received an award from the Yuseong-gu municipality office.
2012.05.10 View 8413